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Series GSE241131 Query DataSets for GSE241131
Status Public on Apr 10, 2024
Title Dysregulation of Neuroprotective Lipoxin Pathway in Astrocytes in Response to Cytokines and Ocular Hypertension
Organism Macaca mulatta
Experiment type Expression profiling by high throughput sequencing
Summary Glaucoma leads to vision loss due to retinal ganglion cell death. Astrocyte reactivity contributes to neurodegeneration. Our recent study found that lipoxin B4 (LXB4), produced by retinal astrocytes, has direct neuroprotective actions on retinal ganglion cells. In this study, we aimed to investigate how the autacoid LXB4 influences astrocyte reactivity in the retina under inflammatory cytokine-induced activation and ocular hypertension conditions. The protective activity of LXB4 was investigatedin vivousing the mouse silicone-oil model of chronic ocular hypertension (n=40). By employing a range of analytical techniques, including bulk RNA-seq, RNAscope in-situhybridization, qPCR, and lipidomic analyses, we discovered the formation of neuroprotective lipoxins in rodents (including the retina and optic nerve), primates (optic nerve), and human brain astrocytes, indicating their presence across various species. Our findings in the mouse retina demonstrated significant dysregulation of the lipoxin pathway in response to chronic ocular hypertension, leading to an increase in 5-lipoxygenase (5-LOX) activity and a decrease in 15-lipoxygenase activity. This dysregulation was coincident with a marked upregulation of astrocyte reactivity. Reactive human brain astrocytes also showed a significant increase in 5-LOX. Administration of LXB4 regulated the lipoxin pathway, restored and amplified LXA4 generation (another lipoxin with distinct bioactions), and mitigated astrocyte reactivity in mouse retinas and human brain astrocytes. In conclusion, the lipoxin pathway is functionally expressed in rodents, primates, and human astrocytes, and is a resident neuroprotective pathway that is downregulated in reactive astrocytes. Novel cellular targets for LXB4’s neuroprotective action are inhibition of astrocyte reactivity and restoration of lipoxin generation. Amplifying the lipoxin pathway is a potential target to disrupt or prevent astrocyte reactivity in neurodegenerative diseases.
 
Overall design Optic nerves from two different macaques were analyzed.
 
Contributor(s) Karnam S, Maurya S, Ng E, Choudhary A, Thobani A, Flanagan JG, Gronert K
Citation(s) 37425861, 38610040
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 EY030218 Homeostatic Role and Therapeutic Potential of the Neuroprotective Retinal Lipoxin Circuit UNIVERSITY OF CALIFORNIA BERKELEY Karsten Gronert
Submission date Aug 17, 2023
Last update date May 02, 2024
Contact name Shubham Maurya
E-mail(s) mshubham@berkeley.edu
Organization name University of California Berkeley
Street address Rm 596, Minor Hall
City Berkeley
ZIP/Postal code 94720
Country USA
 
Platforms (1)
GPL27943 Illumina NovaSeq 6000 (Macaca mulatta)
Samples (2)
GSM7717077 KGSM_01
GSM7717078 KGSM_02
Relations
BioProject PRJNA1006437

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE241131_Normalized_counts.csv.gz 286.7 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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