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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 21, 2019 |
| Title |
Illumina NovaSeq 6000 (Macaca mulatta) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Macaca mulatta |
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| Submission date |
Dec 21, 2019 |
| Last update date |
Dec 21, 2019 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (11290)
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GSM4230273, GSM4230274, GSM4230275, GSM4230276, GSM4230277, GSM4230278
GSM4230279, GSM4230280, GSM4230281, GSM4230282, GSM4230283, GSM4230284, GSM4230285, GSM4332414, GSM4332415, GSM4332416, GSM4332417, GSM4332418, GSM4332419, GSM4332420, GSM4332421, GSM4332422, GSM4332423, GSM4332424, GSM4332425, GSM4487951, GSM4511879, GSM4511880, GSM4511881, GSM4511882, GSM4511883, GSM4511884, GSM4511885, GSM4511886, GSM4511887, GSM4511888, GSM4511889, GSM4557265, GSM4557266, GSM4557267, GSM4557268, GSM4557269, GSM4557270, GSM4557271, GSM4557272, GSM4557273, GSM4557274, GSM4557275, GSM4557276, GSM4557277, GSM4557278, GSM4557279, GSM4590100, GSM4590101, GSM4590102, GSM4590103, GSM4590104, GSM4590114, GSM4590115, GSM4647811, GSM4647812, GSM4647813, GSM4647814, GSM4647815, GSM4647816, GSM4647817, GSM4647818, GSM4725805, GSM4725806, GSM4725807, GSM4742710, GSM4742711, GSM4742712, GSM4742713, GSM4742714, GSM4742715, GSM4742716, GSM4742717, GSM4742718, GSM4742719, GSM4742720, GSM4742721, GSM4742722, GSM4742723, GSM4742724, GSM4742725, GSM4742726, GSM4742727, GSM4742728, GSM4742729, GSM4742730, GSM4742731, GSM4742732, GSM4742733, GSM4742734, GSM4742735, GSM4742736, GSM4742737, GSM4742738, GSM4742739, GSM4742740, GSM4742741, GSM4742742, GSM4742743, GSM4742744, GSM4742745, GSM4742746, GSM4742747, GSM4742748, GSM4742749, GSM4742750, GSM4742751, GSM4742752, GSM4742753, GSM4742754, GSM4742755, GSM4742756, GSM4742757, GSM4742758, GSM4742759, GSM4742760, GSM4742761, GSM4742762, GSM4742763, GSM4742764, GSM4742765, GSM4742766, GSM4742767, GSM4742768, GSM4742769, GSM4742770, GSM4742771, GSM4742772, GSM4742773, GSM4742774, GSM4742775, GSM4742776, GSM4742777, GSM4742778, GSM4742779, GSM4742780, GSM4742781, GSM4742782, GSM4742783, GSM4742784, GSM4742785, GSM4742786, GSM4742787, GSM4742788, GSM4742789, GSM4742790, GSM4742791, GSM4742792, GSM4742793, GSM4742794, GSM4742795, GSM4742796, GSM4742797, GSM4742798, GSM4742799, GSM4742800, GSM4742801, GSM4742802, GSM4742803, GSM4742804, GSM4742805, GSM4742806, GSM4742807, GSM4742808, GSM4742809, GSM4742810, GSM4742811, GSM4742812, GSM4742813, GSM4742814, GSM4742815, GSM4742816, GSM4742817, GSM4742818, GSM4742819, GSM4742820, GSM4742821, GSM4742822, GSM4742823, GSM4742824, GSM4742825, GSM4742826, GSM4742827, GSM4742828, GSM4742829, GSM4742830, GSM4742831, GSM4742832, GSM4796780, GSM4796781, GSM4796782, GSM4796783, GSM4796784, GSM4800305, GSM4800306, GSM4800307, GSM4800308, GSM4800309, GSM4800310, GSM4800311, GSM4800312, GSM4800313, GSM4800314, GSM4800315, GSM4800316, GSM4800317, GSM4800318, GSM4800319, GSM4800320, GSM4800321, GSM4800322, GSM4800323, GSM4800324, GSM4800325, GSM4800326, GSM4800327, GSM4800328, GSM4800330, GSM4800331, GSM4800332, GSM4800333, GSM4800334, GSM4800335, GSM4800336, GSM4800337, GSM4800338, GSM4800339, GSM4800340, GSM4800341, GSM4800342, GSM4800343, GSM4800344, GSM4800345, GSM4800346, GSM4800347, GSM4800348, GSM4800349, GSM4800350, GSM4800351, GSM4800352, GSM4800353, GSM4800354, GSM4800355, GSM4800356, GSM4800357, GSM4800358, GSM4800359, GSM4800360, GSM4800361, GSM4800362, GSM4800363, GSM4800364, GSM4800365, GSM4800366, GSM4800367, GSM4800368, GSM4800369, GSM4800370, GSM4800371, GSM4800372, GSM4800373, GSM4800374, GSM4800375, GSM4800376, GSM4800377, GSM4800378, GSM4800379, GSM4800380, GSM4800381, GSM4800382, GSM4800383, GSM4800384, GSM4800385, GSM4800386, GSM4800387, GSM4800388, GSM4800389, GSM4800390, GSM4800391, GSM4800392, GSM4800393, GSM4800394, GSM4800395, GSM4800396, GSM4800397, GSM4800398, GSM4800399, GSM4800400, GSM4800401, GSM4800402, GSM4800403, GSM4800404, GSM4800405, GSM4800406, GSM4800407, GSM4800408, GSM4800409, GSM4800410, GSM4800411, GSM4822857, GSM4822858, GSM4822859, GSM4822860, GSM4822861, GSM4822862, GSM4822863, GSM4822864, GSM4822865, GSM4822866, GSM4822867, GSM4822868, GSM4822869, GSM4822870, GSM4822871, GSM4822872, GSM4822873, GSM4822874, GSM4822875, GSM4822876, GSM4822877, GSM4822878, GSM4822879, GSM4822880, GSM4822881, GSM4822882, GSM4822883, GSM4822884, GSM4822885, GSM4822886, GSM4822887, GSM4822888, GSM4822889, GSM4822890, GSM4872659, GSM4872660, GSM4872661, GSM4872662, GSM4872663, GSM4872664, GSM4872665, GSM4872666, GSM4872667, GSM4872668, GSM4872669, GSM4872670, GSM4872671, GSM4872673, GSM4872674, GSM4872675, GSM4872676, GSM4872677, GSM4872679, GSM4872680, GSM4872682, GSM4872683, GSM4872684, GSM4916147, GSM4916148, GSM4916149, GSM4916150, GSM5049419, GSM5049420, GSM5049421, GSM5049422, GSM5049423, GSM5049424, GSM5101892, GSM5101893, GSM5101894, GSM5101895, GSM5101896, GSM5101897, GSM5101898, GSM5101899, GSM5101900, GSM5115519, GSM5115520, GSM5115521, GSM5115522, GSM5115523, GSM5115524, GSM5115525, GSM5115526, GSM5115527, GSM5183791, GSM5183792, GSM5183793, GSM5183794, GSM5183795, GSM5183796, GSM5183797, GSM5183798, GSM5183799, GSM5183800, GSM5183801, GSM5183802, GSM5183803, GSM5183804, GSM5183805, GSM5183806, GSM5183807, GSM5183808, GSM5183809, GSM5183810, GSM5183811, GSM5183812, GSM5183813, GSM5183814, GSM5183815, GSM5183816, GSM5183817, GSM5183818, GSM5183819, GSM5183820, GSM5183821, GSM5183822, GSM5183823, GSM5183824, GSM5183825, GSM5183827, GSM5183828, GSM5183829, GSM5183830, GSM5183831, GSM5183832, GSM5183833, GSM5183834, GSM5183835, GSM5183836, GSM5183837, GSM5183838, GSM5183839, GSM5183840, GSM5183841, GSM5183842, GSM5183843, GSM5183844, GSM5183846, GSM5183848, GSM5183849, GSM5183850, GSM5183851, GSM5183852, GSM5183853, GSM5183854, GSM5183855, GSM5183856, GSM5183857, GSM5201844, GSM5201845, GSM5201846, GSM5201847, GSM5201848, GSM5201849, GSM5201850, GSM5201851, GSM5201852, GSM5201853, GSM5208108, GSM5208109, GSM5208110, GSM5218042, GSM5218043, GSM5218044, GSM5218045, GSM5218046, GSM5218047, GSM5218048, GSM5218049, GSM5218050, GSM5218051, GSM5218052, GSM5218053, GSM5218054, GSM5218055, GSM5218056, GSM5218057, GSM5218058, GSM5218059, GSM5218060, GSM5218061, GSM5218062, GSM5218063, GSM5218064, GSM5218065, GSM5218066, GSM5218067, GSM5218068, GSM5218069, GSM5218070, GSM5218071, GSM5218072, GSM5218073, GSM5218074, GSM5218075...
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| Series (118)
|
| GSE142483 |
Deconvoluting alloimmunity in time and space through Serial Intravascular Staining: Evidence for rapid donor tissue-resident memory T cell resident memory formation during gastrointestinal GVHD. |
| GSE145765 |
Single-cell RNA-sequencing analysis for the molecular taxonomy of primate amygdala |
| GSE148829 |
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues |
| GSE149758 |
Defining the tuberculosis lung landscape during disease and latency using single cell technologies |
| GSE150723 |
Transcriptome profiling of Oropharyngeal tissue from chronically SIV infected rhesus macaques |
| GSE151298 |
miRNA and transcriptome profiling of oropharyngeal tissue from chronically SIV infected rhesus macaques |
| GSE151761 |
Innovations in primate interneuron repertoire |
| GSE153598 |
Single-cell RNA-sequencing analysis for the molecular taxonomy of primate hippocampus after sevoflurane exposure |
| GSE156161 |
Multiple stages of evolutionary change in anthrax toxin receptor expression in humans |
| GSE156701 |
Vascular Disease and Thrombosis in SARS-CoV-2 Infected Humans and Rhesus Macaques |
| GSE158304 |
The Rhesus Macaque serves a model for Human Lateral Branching Nephrogenesis |
| GSE158390 |
Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics |
| GSE158440 |
Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics (ExVivo scRNA-seq) |
| GSE158442 |
Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics (InVivo scRNA-seq) |
| GSE159212 |
Baricitinib treatment resolves lower airway inflammation and neutrophil recruitment in SARS-CoV-2-infected rhesus macaques [scRNA-Seq] |
| GSE159213 |
Baricitinib treatment resolves lower airway inflammation and neutrophil recruitment in SARS-CoV-2-infected rhesus macaques [RNA-Seq] |
| GSE159214 |
Baricitinib treatment resolves lower airway inflammation and neutrophil recruitment in SARS-CoV-2-infected rhesus macaques |
| GSE159815 |
The Regulatory Evolution of the Primate Fine-Motor System |
| GSE161862 |
Genetic screening and multipotency in rhesus monkey haploid neural progenitor cells |
| GSE165747 |
Modified Vaccinia Ankara Vector-Based Vaccine Protects Macaques from SARS-CoV-2 Infection, Immune Pathology and Dysfunction in the Lung |
| GSE167319 |
SARS-CoV-2 Invades the Central Nervous System via the Olfactory Route in Rhesus Monkeys |
| GSE167920 |
Transcriptional and anatomical diversity of medium spiny neurons in the primate striatum. |
| GSE169122 |
The Birth, Distribution and Evolution of Primate Cerebral Inhibitory Neurons |
| GSE169390 |
Single-cell RNA-Seq of premature Rhesus macaques lungs with intra-uterine inflammation and therapuetic blockade |
| GSE171064 |
Multi-omic brain and behavioral correlates of cell-free fetal DNA methylation in macaque maternal obesity models |
| GSE171476 |
Transcriptome analysis reveals the contribution of glia -derived cues for maintenance of microglia identity in rhesus macaques |
| GSE171783 |
Sustained viremia suppression by SHIVsf162p3cn-recalled effector-memory CD8+ T cells after PD1-based vaccination |
| GSE172203 |
Single nucleus RNA-seq atlas of macaque ventromedial and dorsomedial hypothalamus |
| GSE172207 |
Cross-Species Analysis Defines the Conservation of Anatomically-Segregated VMH Neuron Populations |
| GSE178377 |
Rhesus Macaque Model of Mismatch Repair-Deficient Colorectal Cancer (RRBS) |
| GSE178381 |
Rhesus Macaque Model of Mismatch Repair-Deficient Colorectal Cancer (RNA-Seq) |
| GSE178383 |
Rhesus Macaque Model of Mismatch Repair-Deficient Colorectal Cancer |
| GSE179236 |
Transcriptomic signatures of the aging brain at single-cell resolution |
| GSE179328 |
Transcriptomic signatures of the aging brain at bulk-tissue resolution |
| GSE179330 |
Links to disease and the social environment in the aging brain transcriptome |
| GSE180748 |
CHIP-Seq analysis of CREB1 binding after ALVAC vaccination in NHP |
| GSE180749 |
CHIP-Seq analysis of CREB1 binding after ALVAC vaccination |
| GSE182666 |
Toxicity after AAV delivery of RNAi expression constructs into nunhuman primate brain |
| GSE185113 |
Rhesus macaque early-gestation trophoblast cells are permissive to Zika virus infection and viral exposure altered extracellular vesicle cargo |
| GSE185291 |
Zika virus impacts extracellular vesicle composition and cellular gene expression in macaque early gestation trophoblasts |
| GSE186158 |
Single-cell transcriptomic atlas reveals the evolution of immune cells and molecules across multiple vertebrate species |
| GSE188879 |
ATAC-seq profiling in CD14+ cells isolated from rhesus macaques vaccinated with V1-deleted DNA/ALVAC/gp120 vaccine [study 2] |
| GSE189032 |
RNA-seq profiling in CD14+ cells isolated from rhesus macaques vaccinated with V1-deleted DNA/ALVAC/gp120 vaccine |
| GSE190165 |
Single cell RNA sequencing analysis of bronchoalveolar lavage following SARS-CoV-2 B.1.351/beta variant challenge in mRNA-1273 vaccinated Rhesus macaques |
| GSE190268 |
Identification and tracking of alloreactive T cell clones in Rhesus Macaques (RM) through the RM-scTCR-Seq platform |
| GSE190659 |
Longitudinal single-cell RNA-sequencing (scRNAseq) of broncho-alaveolar compartment of rhesus macaque model of COVID-19 |
| GSE190913 |
Single cell RNA sequencing analysis of bronchoalveolar lavage samples from SARS-CoV-2 challenged Rhesus macaques |
| GSE192740 |
Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (single cells) |
| GSE192742 |
Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches |
| GSE192772 |
Molecular features driving cellular and regulatory complexity of human brain evolution [ATAC-seq] |
| GSE192773 |
Molecular features driving cellular and regulatory complexity of human brain evolution [RNA-seq] |
| GSE192774 |
Molecular features driving cellular and regulatory complexity of human brain evolution |
| GSE193264 |
Correlates of Durability and Boosting Following Ad26.COV2.S Immunization in Rhesus Macaques |
| GSE195445 |
Cross-Species Single-cell Comparative Analysis of Amygdala |
| GSE195866 |
Microglia P2Y6 receptor signaling regulates a broad range of innate immune responses after TLR engagement |
| GSE196210 |
Morphine Re-arranges Chromatin Spatial Architecture of Primate Cortical Neuron [RNA-seq] |
| GSE196212 |
Morphine Re-arranges Chromatin Spatial Architecture of Primate Cortical Neuron |
| GSE196536 |
miRNAs associated with the pathogenesis of bovine rotavirus |
| GSE196658 |
Cross-species single-cell transcriptomic analysis reveals divergence of cell composition and functions in mammalian ileum epithelium [scRNA-seq_Macaque] |
| GSE196663 |
Cross-species single-cell transcriptomic analysis reveals divergence of cell composition and functions in mammalian ileum epithelium |
| GSE196980 |
Mild SARS-CoV-2 infection in rhesus macaques is associated with viral control prior to antigen-specific T cell responses in tissues |
| GSE198882 |
TREM2+ and interstitial macrophages orchestrate airway inflammation in SARS-CoV-2 infection in rhesus macaques |
| GSE205429 |
Modulation of type-I interferon responses reduces SARS-CoV-2 replication and inflammation in rhesus macaques |
| GSE207518 |
Transcriptome profiling of Basal ganglia tissue from chronically SIV infected rhesus macaques |
| GSE207665 |
Modulation of type-I interferon responses in Rhesus Macaque whole blood |
| GSE208565 |
Single-cell transcriptome Atlas reveals protective characteristics of COVID-19 mRNA vaccine [scRNA-seq] |
| GSE209606 |
Morphine Alters Systemic Responses to SIV Infection of Rhesus Monkeys and Changes Brain Macrophage and Microglia Gene Expression Favoring Neuropathogenesis |
| GSE209615 |
Single-cell transcriptome Atlas reveals protective characteristics of COVID-19 mRNA vaccine [bulk RNA-seq] |
| GSE209616 |
Single-cell transcriptome Atlas reveals protective characteristics of COVID-19 mRNA vaccine |
| GSE209904 |
Long primed germinal centers with enduring affinity maturation and clonal migration |
| GSE211191 |
Intravenous BCG induces primed immune signaling that correlates with protection against tuberculosis |
| GSE211741 |
SARS-CoV-2 infection activates AhR signaling |
| GSE216112 |
Chronic Prenatal Delta-9-tetrahydrocannabinol Exposure Adversely Impacts Placental Function and Development in a Rhesus Macaque Model |
| GSE216456 |
Single cell multi-omic reference atlases of non-human primate immune tissues reveals CD102 as a biomarker for long-lived plasma cells. |
| GSE216917 |
Human gene regulatory evolution is driven by divergence in cis and trans |
| GSE217483 |
Single-nucleus transcriptomic profiling of multiple organs from rhesus macaque model with SARS-CoV-2 infection |
| GSE218199 |
Comparative analysis of innate immune responses to viral infection among animals |
| GSE219095 |
Maternal diet alters long-term innate immune cell memory in fetal and juvenile hematopoietic stem and progenitor cells in nonhuman primate offspring |
| GSE220102 |
Maternal Western Diet is Associated with Distinct Preclinical Pediatric NAFLD Phenotypes in Juvenile Nonhuman Primate Offspring [Liver RNA-seq] |
| GSE220659 |
Activation of Coagulation and Proinflammatory Pathways in Thrombosis with Thrombocytopenia Syndrome and Following COVID-19 Vaccination |
| GSE220783 |
Cannabinoid modulation of gene and microRNA expression in brain (basal ganglia) during chronic HIV/SIV infection |
| GSE221815 |
Single-cell transcriptional analysis of CD45+ cells in the rhesus brain during acute SIV infection. |
| GSE222105 |
Defining prepubertal primate spermatogonial stem cells to address fertility preservation in prepubertal boys |
| GSE223826 |
Chronic Prenatal Delta-9-tetrahydrocannabinol Exposure Adversely Impacts Placental Function |
| GSE226106 |
Viral and host RNA dynamics in tissues from lethal Ebola virus disease in rhesus monkeys |
| GSE228032 |
Single-cell analysis reveals region-heterogeneous responses in rhesus monkey spinal cord with complete injury |
| GSE229169 |
Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate motor cortex |
| GSE231749 |
Cell atlas of trabecular meshwork in glaucomatous non-human primates and DEGs related to tissue contraction based on single-cell transcriptomics |
| GSE232117 |
Interaction Dynamics Between Innate and Adaptive Immune Cells Responding to SARS-CoV-2 Vaccination in Non-Human Primates |
| GSE232873 |
Full-length single-cell BCR sequencing paired with RNA sequencing reveals convergent responses to vaccination |
| GSE232998 |
scRNA-seq data from two macaques in AP-1/c-Fos supports SIV and HIV-1 latency in CD4 T-cells infected in vivo |
| GSE233278 |
Single nucleus RNA-seq of the rhesus macaque nucleus accumbens after chronic morphine exposure |
| GSE233279 |
Single nuclei transcriptomics of human and monkey striatum implicates DNA damage, neuroinflammation, and neurodegeneration signaling in opioid use disorder |
| GSE233449 |
2-hydroxypropyl-beta-cyclodextrin treatment induces modest immune activation in healthy rhesus macaques [ATAC-seq] |
| GSE233466 |
2-hydroxypropyl-beta-cyclodextrin treatment induces modest immune activation in healthy rhesus macaques [RNA-seq] |
| GSE233467 |
2-hydroxypropyl-beta-cyclodextrin treatment induces modest immune activation in healthy rhesus macaques |
| GSE233962 |
Single-cell analysis reveals transcriptional dynamics in primary parathyroid tissue |
| GSE234118 |
Mpox infection protects against re-challenge in rhesus macaques |
| GSE234399 |
Gene expression in the liver and lungs of healthy, SIV-infected and ART-treated rhesus macaques |
| GSE234813 |
CD4 T Follicular Helper 1 Cells Promote HIV-1 Env Antibody Persistence |
| GSE240297 |
Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate motor cortex [Macaque] |
| GSE241131 |
Dysregulation of Neuroprotective Lipoxin Pathway in Astrocytes in Response to Cytokines and Ocular Hypertension |
| GSE243830 |
Response of the amnion to intrauterine inflammation and effects of inhibition of TNF signaling in preterm Rhesus macaque |
| GSE244293 |
High throughput analysis of B cell dynamics and neutralizing antibody development during immunization with a novel clade C HIV-1 envelope |
| GSE244557 |
Chronic alcohol drinking modulates synchrony between midbrain gene transcription and long-lasting changes in dopamine terminal and opioid function in macaques |
| GSE244870 |
TGF-beta blockade drives a transitional effector phenotype in T cells reversing SIV latency and decreasing SIV reservoirs in vivo [scRNA-seq] |
| GSE244871 |
TGF-beta blockade drives a transitional effector phenotype in T cells reversing SIV latency and decreasing SIV reservoirs in vivo |
| GSE245040 |
Mucosal Boosting Enhances Vaccine Protection Against SARS-CoV-2 in Rhesus Macaques |
| GSE245419 |
B cell directed CAR-T cell therapy results in activation of CD8+ cytotoxic CAR-negative bystander T cells in both non-human primates and patients |
| GSE246348 |
Ongoing Production of Tissue-Resident Macrophages from Hematopoietic Stem Cells in Healthy Adult Macaques [ATAC-seq] |
| GSE246350 |
Ongoing Production of Tissue-Resident Macrophages from Hematopoietic Stem Cells in Healthy Adult Macaques [RNA-seq] |
| GSE246351 |
Ongoing Production of Tissue-Resident Macrophages from Hematopoietic Stem Cells in Healthy Adult Macaques |
| GSE249907 |
Age-related increase in the expression of 11β-hydroxysteroid dehydrogenase type 1 in the hippocampus of male rhesus macaques |
| GSE261044 |
Correlation of antigen expression with epigenetic modifications after rAAV delivery of a hyperactive human Factor IX variant in mice and rhesus macaques (CnT NHP) |
| GSE261046 |
Correlation of antigen expression with epigenetic modifications after rAAV delivery of a hyperactive human Factor IX variant in mice and rhesus macaques (Tn5 NHP) |
| GSE261047 |
Correlation of antigen expression with epigenetic modifications after rAAV delivery of a hyperactive human Factor IX variant in mice and rhesus macaques |
| GSE261968 |
Chromatin and gene expression profile at single nuclei level of CD45+ leukocytes from the rhesus brain parenchyma |
| GSE261969 |
Spatial transcriptomics of the Rhesus Macaque Hippocampus during homeostasis and chronic SIV CL757 infection |
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| Supplementary data files not provided |
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