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Series GSE244825 Query DataSets for GSE244825
Status Public on Oct 06, 2023
Title Mouse methylation array of glioblastoma mGB2 cells
Organism Mus musculus
Experiment type Methylation profiling by array
Summary Glioblastoma is the most common malignant brain tumor in adults. Cellular plasticity and the poorly differentiated features result in a fast relapse of the tumors following treatment. Moreover, the immunosuppressive microenvironment proved to be a major obstacle to immunotherapeutic approaches. Branched-chain amino acid transaminase 1 (BCAT1) is a metabolic enzyme that converts branched-chain amino acids into branched-chain keto acids, depleting cellular α-ketoglutarate and producing glutamate. BCAT1 was shown to drive the growth of glioblastoma and other cancers; however, its oncogenic mechanism remains poorly understood. Here, we show that BCAT1 is crucial for maintaining the poorly differentiated state of glioblastoma cells and that its low expression correlates with a more differentiated glioblastoma phenotype. Furthermore, orthotopic tumor injection into immunocompetent mice demonstrated that the brain microenvironment is sufficient to induce differentiation of Bcat1-KO tumors in vivo. We link the transition to a differentiated cell state to the increased activity of TET demethylases and the hypomethylation and activation of neuronal differentiation genes. In addition, the knockout of Bcat1 attenuated immunosuppression, allowing for an extensive infiltration of CD8 + cytotoxic T-cells and complete abrogation of tumor growth. Further analysis in immunodeficient mice revealed that both tumor cell differentiation and immunomodulation following BCAT1-KO contribute to the long-term suppression of tumor growth. In summary, our study unveils BCAT1's pivotal role in promoting glioblastoma growth by inhibiting tumor cell differentiation and sustaining an immunosuppressive milieu. These findings offer a novel therapeutic avenue for targeting glioblastoma through the inhibition of BCAT1.
 
Overall design DNA was extracted from cultured mGB2 cells. Samples unclude the control cells (NT), Bcat1-knockout cells (BKO) and Bcat1-KO cells expressing shRNA targeting Tet1 (shTet1) or Tet2 (shTet2). Each sample was present in triplicates
Web link http://10.1093/neuonc/noad190
 
Contributor(s) Boskovic P, Wilke N, Man K, Lichter P, Francois L, Radlwimmer B
Citation(s) 37769206
Submission date Oct 06, 2023
Last update date Oct 07, 2023
Contact name Pavle Boskovic
E-mail(s) pavle@wustl.edu
Organization name Washington University in Saint Louis
Street address 4515 McKinley Ave
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platforms (1)
GPL32685 Illumina Infinium MouseMethylation array (MouseMethylation-12v1-0_A2)
Samples (12)
GSM7830343 mGB2-control-rep1
GSM7830344 mGB2-control-rep2
GSM7830345 mGB2-control-rep3
Relations
BioProject PRJNA1024968

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE244825_RAW.tar 90.3 Mb (http)(custom) TAR (of IDAT)
GSE244825_matrix_signal.txt.gz 19.5 Mb (ftp)(http) TXT

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