|
| Status |
Public on Oct 06, 2023 |
| Title |
mGB2-BKO-Tet3KD-rep3 |
| Sample type |
genomic |
| |
|
| Source name |
Cultured glioblastoma stem cells
|
| Organism |
Mus musculus |
| Characteristics |
cell type: mGB2
genotype: BKO-Tet3KD
replicate: 3
strain: C57BL/6
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total genomic DNA was extracted using the QIAGEN DNA extration kit
|
| Label |
Cy5 and Cy3
|
| Label protocol |
standard Illumina protocol for the Illumina Infinium MouseMethylation array
|
| |
|
| Hybridization protocol |
standard Illumina protocol for the Illumina Infinium MouseMethylation array
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
mouse glioblastoma stem-cell line (spheroids)
|
| Data processing |
Analysis in R (libaries: knitr, limma, minfi, missMethyl and others)
|
| |
|
| Submission date |
Oct 06, 2023 |
| Last update date |
Oct 06, 2023 |
| Contact name |
Pavle Boskovic |
| E-mail(s) |
pavle@wustl.edu
|
| Organization name |
Washington University in Saint Louis
|
| Street address |
4515 McKinley Ave
|
| City |
Saint Louis |
| State/province |
MO |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platform ID |
GPL32685 |
| Series (1) |
| GSE244825 |
Mouse methylation array of glioblastoma mGB2 cells |
|
