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| Status |
Public on Dec 08, 2023 |
| Title |
Identification of SR34a direct RNA targets in germinated seeds grown for 44 hours and exposed or not to ABA for 2 hours |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Other
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| Summary |
Individual nucleotide crosslinking and immunoprecipitation (iCLIP2) of SR34a-GFP or control GFP from seeds germinated for 44 hours in continuous light and transferred to a control or ABA-containing medium during 2 hours.
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| Overall design |
To investigate the RNA binding landscape of the Arabidopsis thaliana SR34a protein during early seedling establishment, we performed iCLIP2 experiments in germinated seeds expressing the SR34a-GFP or GFP alone (control) grown 44 hours in continuous light and transferred to a control or ABA-containing medium during 2 hours.
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| Contributor(s) |
Laloum T, Lewinski M, Köster T, Staiger D, Duque P |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Nov 24, 2023 |
| Last update date |
Dec 08, 2023 |
| Contact name |
Tom Laloum |
| E-mail(s) |
tomlaloum@gmail.com
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| Phone |
918995207
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| Organization name |
Instituto Gulbenkian de Ciencia
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| Lab |
Plant Molecular Biology
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| Street address |
Rua da Quinta Grande, 6
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| City |
Oeiras |
| ZIP/Postal code |
2780-156 |
| Country |
Portugal |
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| Platforms (1) |
| GPL19580 |
Illumina NextSeq 500 (Arabidopsis thaliana) |
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| Samples (9)
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| This SubSeries is part of SuperSeries: |
| GSE248563 |
sr34a-1 mutant germinated seeds and exposure to ABA |
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| Relations |
| BioProject |
PRJNA1044787 |
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