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Series GSE248560 Query DataSets for GSE248560
Status Public on Dec 08, 2023
Title Identification of SR34a direct RNA targets in germinated seeds grown for 44 hours and exposed or not to ABA for 2 hours
Organism Arabidopsis thaliana
Experiment type Other
Summary Individual nucleotide crosslinking and immunoprecipitation (iCLIP2) of SR34a-GFP or control GFP from seeds germinated for 44 hours in continuous light and transferred to a control or ABA-containing medium during 2 hours.
Overall design To investigate the RNA binding landscape of the Arabidopsis thaliana SR34a protein during early seedling establishment, we performed iCLIP2 experiments in germinated seeds expressing the SR34a-GFP or GFP alone (control) grown 44 hours in continuous light and transferred to a control or ABA-containing medium during 2 hours.
Contributor(s) Laloum T, Lewinski M, Köster T, Staiger D, Duque P
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Submission date Nov 24, 2023
Last update date Dec 08, 2023
Contact name Tom Laloum
Phone 918995207
Organization name Instituto Gulbenkian de Ciencia
Lab Plant Molecular Biology
Street address Rua da Quinta Grande, 6
City Oeiras
ZIP/Postal code 2780-156
Country Portugal
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (9)
GSM7916783 SR34a-GFP iCLIP2 Control biol rep 1
GSM7916784 SR34a-GFP iCLIP2 Control biol rep 2
GSM7916785 SR34a-GFP iCLIP2 Control biol rep 3
This SubSeries is part of SuperSeries:
GSE248563 sr34a-1 mutant germinated seeds and exposure to ABA
BioProject PRJNA1044787

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Supplementary file Size Download File type/resource
GSE248560_35S-GFP.xlsite.bedgraph.gz 662.1 Kb (ftp)(http) BEDGRAPH
GSE248560_SR34a-GFP-ABA.xlsite.bedgraph.gz 53.7 Mb (ftp)(http) BEDGRAPH
GSE248560_SR34a-GFP.xlsite.bedgraph.gz 67.1 Mb (ftp)(http) BEDGRAPH
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