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| Status |
Public on Dec 08, 2023 |
| Title |
RNA-seq experiment of wild-type (WT) and sr34a-1 mutant germinated seeds grown for 44 hours and exposed or not to ABA for 2 hours. |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Transcriptome profiles of wild-type (WT) and sr34a-1 mutant seeds germinated for 44 hours in continuous light and transferred to a control or ABA-containing medium during 2 hours.
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| Overall design |
To investigate the function of SR34a in regulating gene expression and alternative splicing during Arabidopsis seedling establishment and ABA responses, we compared the transcriptomes of WT Col-0 and sr34a-1 mutant germinated seeds under control and in the presence of ABA
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| Contributor(s) |
Laloum T, Martín G, Duque P |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Nov 24, 2023 |
| Last update date |
Dec 08, 2023 |
| Contact name |
Tom Laloum |
| E-mail(s) |
tomlaloum@gmail.com
|
| Phone |
918995207
|
| Organization name |
Instituto Gulbenkian de Ciencia
|
| Lab |
Plant Molecular Biology
|
| Street address |
Rua da Quinta Grande, 6
|
| City |
Oeiras |
| ZIP/Postal code |
2780-156 |
| Country |
Portugal |
| |
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| Platforms (1) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
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| Samples (12)
|
| GSM7916792 |
WT germinated seeds submitted to mock treatment biol rep 1 |
| GSM7916793 |
WT germinated seeds submitted to mock treatment biol rep 2 |
| GSM7916794 |
WT germinated seeds submitted to mock treatment biol rep 3 |
| GSM7916795 |
sr34a-1 germinated seeds submitted to mock treatment biol rep 1 |
| GSM7916796 |
sr34a-1 germinated seeds submitted to mock treatment biol rep 2 |
| GSM7916797 |
sr34a-1 germinated seeds submitted to mock treatment biol rep 3 |
| GSM7916798 |
WT germinated seeds submitted to ABA treatment biol rep 1 |
| GSM7916799 |
WT germinated seeds submitted to ABA treatment biol rep 2 |
| GSM7916800 |
WT germinated seeds submitted to ABA treatment biol rep 3 |
| GSM7916801 |
sr34a-1 germinated seeds submitted to ABA treatment biol rep 1 |
| GSM7916802 |
sr34a-1 germinated seeds submitted to ABA treatment biol rep 2 |
| GSM7916803 |
sr34a-1 germinated seeds submitted to ABA treatment biol rep 3 |
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| This SubSeries is part of SuperSeries: |
| GSE248563 |
sr34a-1 mutant germinated seeds and exposure to ABA |
|
| Relations |
| BioProject |
PRJNA1044786 |
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