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GEO accession:
Series GSE254584
Query DataSets for GSE254584
Status
Public on May 14, 2024
Title
Premeiotic 24-nt phasiRNAs are present in the Zea genus and unique in biogenesis mechanism and molecular function.
Organisms
Zea mays subsp. mexicana
;
Zea luxurians
;
Zea mays subsp. parviglumis
;
Zea mays subsp. mays
Experiment type
Non-coding RNA profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
38739785
Submission date
Jan 30, 2024
Last update date
May 15, 2024
Contact name
Junpeng Zhan
E-mail(s)
zhan@mail.hzau.edu.cn
Organization name
Huazhong Agricultural University
Street address
1 Shizishan Street, Hongshan District
City
Wuhan
State/province
Hubei
ZIP/Postal code
430070
Country
China
Platforms (4)
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GPL34147
NextSeq 550 (Zea mays subsp. mays)
GPL34148
NextSeq 550 (Zea luxurians)
GPL34149
NextSeq 550 (Zea mays subsp. parviglumis)
GPL34150
NextSeq 550 (Zea mays subsp. mexicana)
Samples (216)
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GSM8046414
small RNA-seq: B73-0.4mm-rep1
GSM8046415
small RNA-seq: B73-0.4mm-rep2
GSM8046416
small RNA-seq: B73-2mm-rep1
GSM8046417
small RNA-seq: B73-2mm-rep2
GSM8046418
small RNA-seq: HP301-0.4mm-rep1
GSM8046419
small RNA-seq: HP301-0.4mm-rep2
GSM8046420
small RNA-seq: HP301-2mm-rep1
GSM8046421
small RNA-seq: HP301-2mm-rep2
GSM8046422
small RNA-seq: NC358-0.4mm-rep1
GSM8046423
small RNA-seq: NC358-0.4mm-rep2
GSM8046424
small RNA-seq: NC358-2mm-rep1
GSM8046425
small RNA-seq: NC358-2mm-rep2
GSM8046426
small RNA-seq: NC358-2mm-rep3
GSM8046427
small RNA-seq: Oh43-0.4mm-rep1
GSM8046428
small RNA-seq: Oh43-0.4mm-rep2
GSM8046429
small RNA-seq: Oh43-2mm-rep1
GSM8046430
small RNA-seq: Oh43-2mm-rep2
GSM8046431
small RNA-seq: Oh43-2mm-rep3
GSM8046432
small RNA-seq: RIL003-0.4mm-rep1
GSM8046433
small RNA-seq: RIL003-0.4mm-rep2
GSM8046434
small RNA-seq: RIL003-0.4mm-rep3
GSM8046435
small RNA-seq: RIL003-0.7mm-rep1
GSM8046436
small RNA-seq: RIL003-0.7mm-rep2
GSM8046437
small RNA-seq: RIL003-1.5mm-rep1
GSM8046438
small RNA-seq: RIL003-1.5mm-rep2
GSM8046439
small RNA-seq: RIL003-1.5mm-rep3
GSM8046440
small RNA-seq: TIL11-0.4mm-rep1
GSM8046441
small RNA-seq: TIL11-0.4mm-rep2
GSM8046442
small RNA-seq: TIL11-0.7mm-rep1
GSM8046443
small RNA-seq: TIL11-0.7mm-rep2
GSM8046444
small RNA-seq: TIL11-0.7mm-rep3
GSM8046445
small RNA-seq: TIL11-1.5mm-rep1
GSM8046446
small RNA-seq: TIL11-1.5mm-rep2
GSM8046447
small RNA-seq: TIL11-1.5mm-rep3
GSM8046448
small RNA-seq: TIL11-1mm-rep1
GSM8046449
small RNA-seq: TIL11-1mm-rep2
GSM8046450
small RNA-seq: TIL11-1mm-rep3
GSM8046451
small RNA-seq: TIL11-2mm-rep1
GSM8046452
small RNA-seq: TIL11-2mm-rep2
GSM8046453
small RNA-seq: TIL11-2mm-rep3
GSM8046454
small RNA-seq: TIL25-0.4mm-rep1
GSM8046455
small RNA-seq: TIL25-0.4mm-rep2
GSM8046456
small RNA-seq: TIL25-0.4mm-rep3
GSM8046457
small RNA-seq: TIL25-1.5mm-rep1
GSM8046458
small RNA-seq: TIL25-1.5mm-rep2
GSM8046459
small RNA-seq: TIL25-1.5mm-rep3
GSM8046460
small RNA-seq:Il14H-0.4mm-rep3
GSM8046461
small RNA-seq:Il14H-0.4mm-rep4
GSM8046462
small RNA-seq:Il14H-0.4mm-rep5
GSM8046463
small RNA-seq:Il14H-2mm-rep3
GSM8046464
small RNA-seq:Il14H-2mm-rep4
GSM8046465
small RNA-seq: ago18HM-0.5mm-rep1
GSM8046466
small RNA-seq: ago18HM-0.5mm-rep2
GSM8046467
small RNA-seq: ago18HM-0.5mm-rep3
GSM8046468
small RNA-seq: ago18HM-2mm-rep1
GSM8046469
small RNA-seq: ago18HM-2mm-rep2
GSM8046470
small RNA-seq: ago18HM-2mm-rep3
GSM8046471
small RNA-seq: ago18HM-5mm-rep1
GSM8046472
small RNA-seq: ago18HM-5mm-rep2
GSM8046473
small RNA-seq: ago18HM-5mm-rep3
GSM8046474
small RNA-seq: ago18HT-0.5mm-rep1
GSM8046475
small RNA-seq: ago18HT-0.5mm-rep2
GSM8046476
small RNA-seq: ago18HT-0.5mm-rep3
GSM8046477
small RNA-seq: ago18HT-2mm-rep1
GSM8046478
small RNA-seq: ago18HT-2mm-rep2
GSM8046479
small RNA-seq: ago18HT-2mm-rep3
GSM8046480
small RNA-seq: ago18HT-5mm-rep1
GSM8046481
small RNA-seq: ago18HT-5mm-rep2
GSM8046482
small RNA-seq: ago18HT-5mm-rep3
GSM8046483
Smart-seq2: B73-0.4mm-rep1
GSM8046484
Smart-seq2: B73-0.4mm-rep2
GSM8046485
Smart-seq2: B73-2mm-rep1
GSM8046486
Smart-seq2: B73-2mm-rep2
GSM8046487
Smart-seq2: HP301-0.4mm-rep1
GSM8046488
Smart-seq2: HP301-0.4mm-rep2
GSM8046489
Smart-seq2: HP301-2mm-rep1
GSM8046490
Smart-seq2: HP301-2mm-rep2
GSM8046491
Smart-seq2: NC358-0.4mm-rep1
GSM8046492
Smart-seq2: NC358-0.4mm-rep2
GSM8046493
Smart-seq2: NC358-2mm-rep1
GSM8046494
Smart-seq2: NC358-2mm-rep2
GSM8046495
Smart-seq2: NC358-2mm-rep3
GSM8046496
Smart-seq2: Oh43-0.4mm-rep1
GSM8046497
Smart-seq2: Oh43-0.4mm-rep2
GSM8046498
Smart-seq2: Oh43-2mm-rep1
GSM8046499
Smart-seq2: Oh43-2mm-rep2
GSM8046500
Smart-seq2: Oh43-2mm-rep3
GSM8046501
Smart-seq2: RIL003-0.4mm-rep1
GSM8046502
Smart-seq2: RIL003-0.4mm-rep2
GSM8046503
Smart-seq2: RIL003-0.4mm-rep3
GSM8046504
Smart-seq2: RIL003-0.7mm-rep1
GSM8046505
Smart-seq2: RIL003-0.7mm-rep2
GSM8046506
Smart-seq2: RIL003-1.5mm-rep1
GSM8046507
Smart-seq2: RIL003-1.5mm-rep2
GSM8046508
Smart-seq2: RIL003-1.5mm-rep3
GSM8046509
Smart-seq2: TIL11-0.4mm-rep1
GSM8046510
Smart-seq2: TIL11-0.4mm-rep2
GSM8046511
Smart-seq2: TIL11-0.7mm-rep1
GSM8046512
Smart-seq2: TIL11-0.7mm-rep2
GSM8046513
Smart-seq2: TIL11-0.7mm-rep3
GSM8046514
Smart-seq2: TIL11-1.5mm-rep1
GSM8046515
Smart-seq2: TIL11-1.5mm-rep2
GSM8046516
Smart-seq2: TIL11-1.5mm-rep3
GSM8046517
Smart-seq2: TIL11-1mm-rep1
GSM8046518
Smart-seq2: TIL11-1mm-rep2
GSM8046519
Smart-seq2: TIL11-1mm-rep3
GSM8046520
Smart-seq2: TIL11-2mm-rep1
GSM8046521
Smart-seq2: TIL11-2mm-rep2
GSM8046522
Smart-seq2: TIL11-2mm-rep3
GSM8046523
Smart-seq2: TIL25-0.4mm-rep1
GSM8046524
Smart-seq2: TIL25-0.4mm-rep2
GSM8046525
Smart-seq2: TIL25-0.4mm-rep3
GSM8046526
Smart-seq2: TIL25-1.5mm-rep1
GSM8046527
Smart-seq2: TIL25-1.5mm-rep2
GSM8046528
Smart-seq2: TIL25-1.5mm-rep3
GSM8046529
Smart-seq2:Il14H-0.4mm-rep3
GSM8046530
Smart-seq2:Il14H-0.4mm-rep4
GSM8046531
Smart-seq2:Il14H-0.4mm-rep5
GSM8046532
Smart-seq2:Il14H-2mm-rep3
GSM8046533
Smart-seq2:Il14H-2mm-rep4
GSM8046534
Smart-seq2: ago18HM-0.5mm-rep1
GSM8046535
Smart-seq2: ago18HM-0.5mm-rep2
GSM8046536
Smart-seq2: ago18HM-0.5mm-rep3
GSM8046537
Smart-seq2: ago18HM-2mm-rep1
GSM8046538
Smart-seq2: ago18HM-2mm-rep2
GSM8046539
Smart-seq2: ago18HM-2mm-rep3
GSM8046540
Smart-seq2: ago18HM-5mm-rep1
GSM8046541
Smart-seq2: ago18HM-5mm-rep2
GSM8046542
Smart-seq2: ago18HM-5mm-rep3
GSM8046543
Smart-seq2: ago18HT-0.5mm-rep1
GSM8046544
Smart-seq2: ago18HT-0.5mm-rep2
GSM8046545
Smart-seq2: ago18HT-2mm-rep1
GSM8046546
Smart-seq2: ago18HT-2mm-rep2
GSM8046547
Smart-seq2: ago18HT-2mm-rep3
GSM8046548
Smart-seq2: ago18HT-5mm-rep1
GSM8046549
Smart-seq2: ago18HT-5mm-rep2
GSM8046550
Smart-seq2: ago18HT-5mm-rep3
GSM8046551
nanoPARE: B73-0.4mm-rep1
GSM8046552
nanoPARE: B73-0.4mm-rep2
GSM8046553
nanoPARE: B73-2mm-rep1
GSM8046554
nanoPARE: B73-2mm-rep2
GSM8046555
nanoPARE: HP301-0.4mm-rep1
GSM8046556
nanoPARE: HP301-0.4mm-rep2
GSM8046557
nanoPARE: HP301-2mm-rep1
GSM8046558
nanoPARE: HP301-2mm-rep2
GSM8046559
nanoPARE: NC358-0.4mm-rep1
GSM8046560
nanoPARE: NC358-0.4mm-rep2
GSM8046561
nanoPARE: NC358-2mm-rep1
GSM8046562
nanoPARE: NC358-2mm-rep2
GSM8046563
nanoPARE: NC358-2mm-rep3
GSM8046564
nanoPARE: Oh43-0.4mm-rep1
GSM8046565
nanoPARE: Oh43-0.4mm-rep2
GSM8046566
nanoPARE: Oh43-2mm-rep1
GSM8046567
nanoPARE: Oh43-2mm-rep2
GSM8046568
nanoPARE: Oh43-2mm-rep3
GSM8046569
nanoPARE: RIL003-0.4mm-rep1
GSM8046570
nanoPARE: RIL003-0.4mm-rep2
GSM8046571
nanoPARE: RIL003-0.4mm-rep3
GSM8046572
nanoPARE: RIL003-0.7mm-rep1
GSM8046573
nanoPARE: RIL003-0.7mm-rep2
GSM8046574
nanoPARE: RIL003-1.5mm-rep1
GSM8046575
nanoPARE: RIL003-1.5mm-rep2
GSM8046576
nanoPARE: RIL003-1.5mm-rep3
GSM8046577
nanoPARE: TIL11-0.4mm-rep1
GSM8046578
nanoPARE: TIL11-0.4mm-rep2
GSM8046579
nanoPARE: TIL11-0.7mm-rep1
GSM8046580
nanoPARE: TIL11-0.7mm-rep2
GSM8046581
nanoPARE: TIL11-0.7mm-rep3
GSM8046582
nanoPARE: TIL11-1.5mm-rep1
GSM8046583
nanoPARE: TIL11-1.5mm-rep2
GSM8046584
nanoPARE: TIL11-1.5mm-rep3
GSM8046585
nanoPARE: TIL11-1mm-rep1
GSM8046586
nanoPARE: TIL11-1mm-rep2
GSM8046587
nanoPARE: TIL11-1mm-rep3
GSM8046588
nanoPARE: TIL11-2mm-rep1
GSM8046589
nanoPARE: TIL11-2mm-rep2
GSM8046590
nanoPARE: TIL11-2mm-rep3
GSM8046591
nanoPARE: TIL25-0.4mm-rep1
GSM8046592
nanoPARE: TIL25-0.4mm-rep2
GSM8046593
nanoPARE: TIL25-0.4mm-rep3
GSM8046594
nanoPARE: TIL25-1.5mm-rep1
GSM8046595
nanoPARE: TIL25-1.5mm-rep2
GSM8046596
nanoPARE: TIL25-1.5mm-rep3
GSM8046597
nanoPARE:Il14H-0.4mm-rep3
GSM8046598
nanoPARE:Il14H-0.4mm-rep4
GSM8046599
nanoPARE:Il14H-0.4mm-rep5
GSM8046600
nanoPARE:Il14H-2mm-rep3
GSM8046601
nanoPARE:Il14H-2mm-rep4
GSM8046602
nanoPARE: ago18HM-0.5mm-rep1
GSM8046603
nanoPARE: ago18HM-0.5mm-rep2
GSM8046604
nanoPARE: ago18HM-0.5mm-rep3
GSM8046605
nanoPARE: ago18HM-2mm-rep1
GSM8046606
nanoPARE: ago18HM-2mm-rep2
GSM8046607
nanoPARE: ago18HM-2mm-rep3
GSM8046608
nanoPARE: ago18HM-5mm-rep1
GSM8046609
nanoPARE: ago18HM-5mm-rep2
GSM8046610
nanoPARE: ago18HM-5mm-rep3
GSM8046611
nanoPARE: ago18HT-0.5mm-rep1
GSM8046612
nanoPARE: ago18HT-0.5mm-rep2
GSM8046613
nanoPARE: ago18HT-2mm-rep1
GSM8046614
nanoPARE: ago18HT-2mm-rep2
GSM8046615
nanoPARE: ago18HT-2mm-rep3
GSM8046616
nanoPARE: ago18HT-5mm-rep1
GSM8046617
nanoPARE: ago18HT-5mm-rep2
GSM8046618
nanoPARE: ago18HT-5mm-rep3
GSM8046619
TraPR small RNA-seq: ago18HM-2mm-rep1
GSM8046620
TraPR small RNA-seq: ago18HM-2mm-rep2
GSM8046621
TraPR small RNA-seq: ago18HM-5mm-rep1
GSM8046622
TraPR small RNA-seq: ago18HM-5mm-rep2
GSM8046623
TraPR small RNA-seq: ago18HM-5mm-rep3
GSM8046624
TraPR small RNA-seq: ago18HT-2mm-rep1
GSM8046625
TraPR small RNA-seq: ago18HT-2mm-rep2
GSM8046626
TraPR small RNA-seq: ago18HT-2mm-rep3
GSM8046627
TraPR small RNA-seq: ago18HT-5mm-rep1
GSM8046628
TraPR small RNA-seq: ago18HT-5mm-rep2
GSM8046629
TraPR small RNA-seq: ago18HT-5mm-rep3
This SuperSeries is composed of the following SubSeries:
GSE254581
Premeiotic 24-nt phasiRNAs are present in the Zea genus and unique in biogenesis mechanism and molecular function [small_RNA]
GSE254582
Premeiotic 24-nt phasiRNAs are present in the Zea genus and unique in biogenesis mechanism and molecular function [Smart-seq2+nanoPARE]
GSE254583
Premeiotic 24-nt phasiRNAs are present in the Zea genus and unique in biogenesis mechanism and molecular function [TraPR small RNA-seq]
Relations
BioProject
PRJNA1071082
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE254584_RAW.tar
3.2 Mb
(http)
(custom)
TAR (of TSV)
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