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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 30, 2019 |
| Title |
Illumina NovaSeq 6000 (Solanum lycopersicum) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Solanum lycopersicum |
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| Submission date |
Dec 30, 2019 |
| Last update date |
Dec 30, 2019 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (803)
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GSM4238125, GSM4238126, GSM4238127, GSM4238128, GSM4238129, GSM4238130
GSM4238131, GSM4238132, GSM4238133, GSM4238134, GSM4238135, GSM4238136, GSM4238137, GSM4238138, GSM4238139, GSM4238140, GSM4238141, GSM4238142, GSM4473154, GSM4473155, GSM4473156, GSM4473157, GSM4473158, GSM4473159, GSM4473160, GSM4473161, GSM4473162, GSM4473163, GSM4473164, GSM4473165, GSM4473166, GSM4473167, GSM4473168, GSM4473169, GSM4473170, GSM4473171, GSM4473172, GSM4473173, GSM4473174, GSM4473175, GSM4473176, GSM4473177, GSM4699057, GSM4699058, GSM4699059, GSM4699060, GSM4732633, GSM4732634, GSM4732635, GSM4732636, GSM4732637, GSM4732638, GSM4732639, GSM4732640, GSM4732641, GSM4732642, GSM4732643, GSM4732644, GSM4732645, GSM4732646, GSM4732647, GSM4732648, GSM4732649, GSM4732650, GSM4732651, GSM4732652, GSM4732653, GSM4732654, GSM4732655, GSM4732656, GSM5139840, GSM5139841, GSM5139842, GSM5139843, GSM5139844, GSM5139845, GSM5139846, GSM5139847, GSM5139848, GSM5139849, GSM5139850, GSM5139851, GSM5320372, GSM5320373, GSM5320374, GSM5320375, GSM5320376, GSM5320377, GSM5320378, GSM5320379, GSM5320380, GSM5320381, GSM5320382, GSM5320383, GSM5375001, GSM5375002, GSM5375003, GSM5375004, GSM5375005, GSM5375006, GSM5400660, GSM5400661, GSM5400662, GSM5400663, GSM5400664, GSM5400665, GSM5400666, GSM5400667, GSM5400668, GSM5400669, GSM5400670, GSM5400671, GSM5618933, GSM5618934, GSM5618935, GSM5618936, GSM5618937, GSM5618938, GSM5618939, GSM5618940, GSM5618941, GSM5618942, GSM5618943, GSM5618944, GSM5618945, GSM5618946, GSM5618947, GSM5618948, GSM5618949, GSM5618950, GSM5618951, GSM5618952, GSM5618953, GSM5618954, GSM5618955, GSM5618956, GSM5618957, GSM5618958, GSM5618959, GSM5618960, GSM5618961, GSM5620919, GSM5620920, GSM5620921, GSM5620922, GSM5620923, GSM5620924, GSM5620925, GSM5620926, GSM5620927, GSM5620928, GSM5620929, GSM5620930, GSM5620931, GSM5620932, GSM5620933, GSM5620934, GSM5620935, GSM5620936, GSM5620937, GSM5620938, GSM5620939, GSM5620940, GSM5620941, GSM5620942, GSM5631379, GSM5631380, GSM5631381, GSM5631382, GSM5631383, GSM5631384, GSM5631385, GSM5631386, GSM5631387, GSM5699897, GSM5699898, GSM5699899, GSM5699900, GSM5699901, GSM5699902, GSM5699903, GSM5699904, GSM5699905, GSM5699906, GSM5699907, GSM5699908, GSM5699909, GSM5699910, GSM5699911, GSM5699912, GSM5699913, GSM5699914, GSM5699915, GSM5699916, GSM5699917, GSM5699918, GSM5699919, GSM5699920, GSM5813901, GSM5813902, GSM5813903, GSM5813904, GSM5813905, GSM5813906, GSM5813907, GSM5813908, GSM5813909, GSM5813910, GSM5840331, GSM5840332, GSM5840333, GSM5840334, GSM5840335, GSM5840336, GSM5840337, GSM5840338, GSM5840339, GSM5840340, GSM5840341, GSM5840342, GSM5840343, GSM5840344, GSM5840345, GSM5840346, GSM5840347, GSM5840348, GSM5840349, GSM5840350, GSM5840351, GSM5840352, GSM5840353, GSM5840354, GSM5840355, GSM5840356, GSM5840357, GSM5840358, GSM5840359, GSM5840360, GSM5840361, GSM5840362, GSM5840363, GSM5840364, GSM5840365, GSM5840366, GSM5903655, GSM5903656, GSM5903657, GSM5903658, GSM5903659, GSM5903660, GSM5903661, GSM5903662, GSM5903663, GSM5903664, GSM5903665, GSM5903666, GSM5903667, GSM5903668, GSM5903669, GSM5903670, GSM5903671, GSM5903672, GSM5903673, GSM5903674, GSM5903675, GSM5903676, GSM5903677, GSM5903678, GSM5903679, GSM5903680, GSM5903681, GSM5903682, GSM5903683, GSM5903684, GSM5903685, GSM5903686, GSM5903687, GSM5903688, GSM5903689, GSM5903690, GSM5903691, GSM5903692, GSM5903693, GSM5903694, GSM5903695, GSM5903696, GSM5903697, GSM5903698, GSM5903699, GSM5903700, GSM5903701, GSM5903702, GSM5903703, GSM5903704, GSM5903705, GSM5903706, GSM5903707, GSM5903708, GSM5903709, GSM5903710, GSM5903711, GSM5903712, GSM5903713, GSM5903714, GSM5903715, GSM5903716, GSM5903717, GSM5903718, GSM5903719, GSM5903720, GSM5903721, GSM5903722, GSM5903723, GSM5903724, GSM5903725, GSM5903726, GSM5962382, GSM5962383, GSM5962384, GSM5962385, GSM5962386, GSM5962387, GSM5962388, GSM5962389, GSM5962390, GSM5962391, GSM5962392, GSM5962393, GSM6068498, GSM6068499, GSM6068500, GSM6068507, GSM6068508, GSM6068509, GSM6083546, GSM6083547, GSM6083548, GSM6135265, GSM6135266, GSM6135267, GSM6135268, GSM6529487, GSM6529488, GSM6529489, GSM6529490, GSM6529491, GSM6529492, GSM6529493, GSM6529494, GSM6547557, GSM6547558, GSM6547559, GSM6547560, GSM6547561, GSM6547562, GSM6615945, GSM6615946, GSM6615947, GSM6615948, GSM6615949, GSM6615950, GSM6615951, GSM6615952, GSM6615953, GSM6615954, GSM6615955, GSM6615956, GSM6615957, GSM6615958, GSM6615959, GSM6615960, GSM6615961, GSM6615962, GSM6723100, GSM6723101, GSM6723102, GSM6723103, GSM6723104, GSM6723105, GSM6723106, GSM6723107, GSM6723108, GSM6723109, GSM6723110, GSM6723111, GSM6970605, GSM6970606, GSM6970607, GSM6970608, GSM6995221, GSM6995222, GSM6995223, GSM6995224, GSM6995225, GSM6995226, GSM7040825, GSM7044267, GSM7044268, GSM7044269, GSM7085903, GSM7085904, GSM7085905, GSM7085906, GSM7085907, GSM7085908, GSM7085909, GSM7085910, GSM7085911, GSM7152820, GSM7152821, GSM7152822, GSM7152823, GSM7152824, GSM7152825, GSM7152826, GSM7152827, GSM7152828, GSM7152829, GSM7152830, GSM7152831, GSM7152832, GSM7152833, GSM7152834, GSM7152835, GSM7152836, GSM7152837, GSM7152838, GSM7152839, GSM7152840, GSM7152841, GSM7152842, GSM7152843, GSM7152844, GSM7152845, GSM7152846, GSM7152847, GSM7152848, GSM7152849, GSM7152850, GSM7152851, GSM7152852, GSM7152853, GSM7152854, GSM7152855, GSM7152856, GSM7152857, GSM7152858, GSM7152859, GSM7152860, GSM7152861, GSM7152862, GSM7152863, GSM7152864, GSM7152865, GSM7152866, GSM7152867, GSM7152868, GSM7152869, GSM7152870, GSM7152871, GSM7152872, GSM7152873, GSM7152874, GSM7152875, GSM7152876, GSM7152877, GSM7152878, GSM7152879, GSM7152880, GSM7152881, GSM7152882, GSM7152883, GSM7152884, GSM7152885, GSM7152886, GSM7152887, GSM7152888, GSM7152889, GSM7152890, GSM7152891, GSM7152892, GSM7152893, GSM7152894, GSM7152895, GSM7152896, GSM7152897, GSM7152898, GSM7152899, GSM7152900, GSM7152901, GSM7152902, GSM7152903, GSM7152904, GSM7152905, GSM7152906, GSM7152907, GSM7152908, GSM7152909, GSM7152910, GSM7152911...
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| Series (61)
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| GSE142712 |
Histone demethylase SlJMJ6 promotes fruit ripening by removing H3K27 methylation of ripening-related genes in tomato [ChIP-Seq] |
| GSE142714 |
Histone demethylase SlJMJ6 promotes fruit ripening by removing H3K27 methylation of ripening-related genes in tomato |
| GSE148525 |
Histone demethylase SlJMJ7 Integrates DNA demethylation, ethylene signal and major ripening-related transcription factors in coordination of fruit ripening in tomato [ChIP-seq] |
| GSE148526 |
Histone demethylase SlJMJ7 Integrates DNA demethylation, ethylene signal and major ripening-related transcription factors in coordination of fruit ripening in tomato [RNA-seq] |
| GSE148527 |
Histone demethylase SlJMJ7 integrates DNA demethylation, ethylene signal and major ripening-related transcription factors in coordination of fruit ripening in tomato. |
| GSE154419 |
Flowering time and inflorescence architecture are regulated by FRUITFULL-like genes in tomato |
| GSE155317 |
DNA features beyond the transcription factor binding sites specify target recognition by plant bHLHs [DAP-seq] |
| GSE155321 |
DNA features beyond the transcription factor binding sites specify target recognition by plant bHLHs |
| GSE156499 |
High CO2- and pathogen-driven expression of carbonic anhydrase βCA3 confers basal immunity in tomato |
| GSE168433 |
Transcriptomes of Wild Type tomato and slstop1 under -Al/+Al treatment |
| GSE174416 |
The VIL gene CRAWLING ELEPHANT controls plant maturation and differentiation in tomato via polycomb silencing |
| GSE174607 |
The expression profile of tomato in response to heat stress. |
| GSE177487 |
Histone demethylase SlJMJ4 promotes leaf senescence via removal of H3K27 methylation of senescence-related genes in tomato |
| GSE178904 |
Next Generation Sequencing (m6A-seq) Reveals RNA m6A Methylation Patterns During the Expansion of Tomato |
| GSE185583 |
Characterising the molecular-physiological basis of pollen abortion upon prolonged high temperature stress. |
| GSE185629 |
Characterizing the molecular-physiological basis of pollen abortion upon prolonged high temperature stress |
| GSE186072 |
Jasmonic acid and dark induced leaf senescence in tomato was alleviated by knock-out of SlWRKY37 |
| GSE195546 |
Histone methyltransferases SlSDG33 and SlSDG34 mediate organ-specific nitrogen responses in tomato |
| GSE196887 |
Histone code dynamics during nitrogen response in tomato |
| GSE199011 |
Transcriptomic profile of two tomato cultivars and their reciprocal hybrids |
| GSE201607 |
Machine learning accelerates the dissection of mitostasis as a cross-species central biological hub for leaf senescence |
| GSE201931 |
High-throughput single-cell transcriptome profiling of tomato leaf |
| GSE202902 |
SlWRKY33 confers cold tolerance through activation of various downstream signaling pathways in cultivated tomato |
| GSE212403 |
Single cell data: suberized exodermis is required for tomato drought tolerance |
| GSE212404 |
Protoplast data: suberized exodermis is required for tomato drought tolerance |
| GSE212405 |
Suberized exodermis is required for tomato drought tolerance |
| GSE212774 |
RNA-seq analysis of axillary buds of tomato WT, 156OE and rSBP15OE plants |
| GSE214787 |
A role of PSK-CPK28-GS2 signalling in optimizing growth and defence in tomato |
| GSE217631 |
Transcriptome, Biochemical and Phenotypic Analysis of the Effects of a Precision Engineered Biostimulant for Inducing Salinity Stress Tolerance in Tomato |
| GSE223674 |
Gibberellin and the microRNA156/SlSBP module synergistically regulate tomato floral meristem activity and fruit patterning |
| GSE223774 |
The pivotal ripening gene SlDML2 participates in regulating disease resistance in tomato |
| GSE225319 |
MicroRNAs Associated with AGL6 and IAA9 function in tomato fruit set |
| GSE226856 |
Chilling stress drives organ specific transcriptional cascades and dampens diurnal oscillation in Tomato |
| GSE229117 |
Priming of tomato mother plants using chemical elicitors linked to whole genome DNA methylation. |
| GSE232828 |
Local and systemic transcriptome and spliceome changes induced by Meloidigyne incognita in tomato roots. |
| GSE233265 |
Evolutional heterochromatin condensation delineates chromocenter formation and retrotransposon constraint in plants |
| GSE235023 |
Tomato exocarp-specific promoter screen by RNA-seq of tomato cultivar Alisa Craig exocarp, mesocarp and leaf |
| GSE235565 |
Anthocyanin transcriptional profile and pigmentation pattern in the purple tomato fruit in response to light |
| GSE243804 |
aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs [ChIP-Seq] |
| GSE243806 |
aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs |
| GSE244009 |
An improved terminal ribose-modified small RNA sequencing (TRM-sRNA-seq) reveals novel features of miRNA modification and identifies HEN1-independent 2’-O-modified sRNAs derived from tRNAs |
| GSE245472 |
Transcriptomic exploration of Solanum spp. resistance upon early-stage broomrape parasitism |
| GSE245528 |
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [RNA-seq] |
| GSE245529 |
KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac |
| GSE246015 |
RNA polymerase IV is essential for tomato embryo development through mediating non-CG methylation [Bisulfite_seq] |
| GSE246016 |
RNA polymerase IV is essential for tomato embryo development through mediating non-CG methylation [RNA-Seq] |
| GSE246017 |
RNA polymerase IV is essential for tomato embryo development through mediating non-CG methylation [sRNA-seq] |
| GSE246018 |
RNA polymerase IV is essential for tomato embryo development through mediating non-CG methylation |
| GSE254893 |
Combined analysis of ATAC-Seq and RNA-Seq reveal a potential role of WRKY34 in tomato response to cold stress [ATAC] |
| GSE261229 |
RNA sequencing of slgols2 tomato fruits |
| GSE261816 |
Effect of RS2Z35 and RS2Z36 single and double knockout on gene expression and splicing during control and heat stress conditions in tomato (Solanum Lycopersicum) leaf tissue |
| GSE262552 |
Tomato RS2Z35 and RS2Z36 |
| GSE262653 |
Biological Control of Root-Knot Nematode Meloidogyne incognita Infection of Tomato (Solanum lycopersicum L.) by the Oomycete Biocontrol Agent Pythium oligandrum |
| GSE263861 |
Nuclear factors NF-YC3 and NF-YBs positively regulate arbuscular mycorrhizal symbiosis in tomato |
| GSE264066 |
Effects of strigolactones on tomato leaf transcriptome under irrigated and repeated water stress conditions |
| GSE269996 |
Histone demethylase JMJ4 interacts with transcription factor BLH3 to modulate jasmonate biosynthesis in tomato response to cold stress [ChIP-seq] |
| GSE269997 |
Histone demethylase JMJ4 interacts with transcription factor BLH3 to modulate jasmonate biosynthesis in tomato response to cold stress [RNA-seq] |
| GSE273942 |
Developmentally regulated generation of a systemic signal for long-lasting defence priming in tomato [WGBS] |
| GSE273943 |
Developmentally regulated generation of a systemic signal for long-lasting defence priming in tomato [small RNA-seq] |
| GSE273944 |
Developmentally regulated generation of a systemic signal for long-lasting defence priming in tomato [RNA-seq] |
| GSE279454 |
Effect of Penicillium chrysogenum, Penicillium minioluteum, and Serendipita indica on gene expression in Solanum lycopersicum plants under control and drought stress conditions |
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| Supplementary data files not provided |
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