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Series GSE256551

Query DataSets for GSE256551

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR101QFW)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing C08G9.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR101QFW/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 24, 2024

Last update date

Oct 24, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL13657

Illumina HiSeq 2000 (Caenorhabditis elegans)

Samples (2)

GSM8106136	TF ChIP-seq from whole organism (ENCLB067JEV)
GSM8106137	TF ChIP-seq from whole organism (ENCLB869LWO)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE256551_ENCFF016PUP_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256551_ENCFF092FQQ_read-depth_normalized_signal_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE256551_ENCFF215SBJ_optimal_IDR_thresholded_peaks_ce11.bigBed	97.7 Kb	(ftp)(http)	BIGBED
GSE256551_ENCFF237SNN_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256551_ENCFF305JOP_read-depth_normalized_signal_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE256551_ENCFF330MDX_optimal_IDR_thresholded_peaks_ce10.bigBed	97.5 Kb	(ftp)(http)	BIGBED
GSE256551_ENCFF342HPK_optimal_IDR_thresholded_peaks_ce11.bed.gz	29.7 Kb	(ftp)(http)	BED
GSE256551_ENCFF426KGO_control_normalized_signal_ce10.bigWig	9.9 Mb	(ftp)(http)	BIGWIG
GSE256551_ENCFF530BPT_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE256551_ENCFF578PIL_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE256551_ENCFF661XSE_peaks_and_background_as_input_for_IDR_ce11.bed.gz	769.0 Kb	(ftp)(http)	BED
GSE256551_ENCFF817XCX_peaks_and_background_as_input_for_IDR_ce10.bed.gz	769.0 Kb	(ftp)(http)	BED
GSE256551_ENCFF873IGU_optimal_IDR_thresholded_peaks_ce10.bed.gz	29.6 Kb	(ftp)(http)	BED
GSE256551_ENCFF934ILF_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE256551_RAW.tar	123.2 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA