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Sample GSM8106136 Query DataSets for GSM8106136
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCLB067JEV)
Sample type SRA
Source name Caenorhabditis elegans strain OP513 (unc-119(tm4063) III; wgIs513) hermaphrodite late embryo 5 hours post synchronization using egg bleaching insertion targeting C. elegans C08G9.2
Organism Caenorhabditis elegans
Characteristics antibody: C08G9.2
cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS485AYJ (SAMN40085082)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS485AYJ
note: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to C08G9.2
Sex: hermaphrodite
dev stage: late embryonic
age: unknown
donor_id: ENCDO095DXY
lab: Valerie Reinke, Yale
source: Valerie Reinke
worm synchronization stage: egg bleaching
post synchronization time: 5
post synchronization time units: hour
link: ENCBS485AYJ at ENCODE;
Extracted molecule genomic DNA
Extraction protocol general protocol:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq of transgenic worms expressing C08G9.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR101QFW
assay title: TF ChIP-seq
assembly: ce11, ce10
possible controls: ENCSR530XBH
encode release date: 2016-05-24
lab: Valerie Reinke, Yale
library encode accession: ENCLB067JEV
fragmentation methods: sonication (generic microtip)
Data processing See GSM*_README.txt supplementary file linked below
Submission date Feb 24, 2024
Last update date Feb 27, 2024
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13657
Series (1)
GSE256551 TF ChIP-seq from whole organism (ENCSR101QFW)
BioSample SAMN40085082

Supplementary file Size Download File type/resource
GSM8106136_ENCFF047LAR_peaks_and_background_as_input_for_IDR_ce10.bed.gz 747.7 Kb (ftp)(http) BED
GSM8106136_ENCFF139YBE_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106136_ENCFF173QPG_read-depth_normalized_signal_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106136_ENCFF447QZF_peaks_and_background_as_input_for_IDR_ce11.bed.gz 750.9 Kb (ftp)(http) BED
GSM8106136_ENCFF457ERU_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSM8106136_ENCFF472OFJ_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM8106136_ENCFF549AUY_signal_of_unique_reads_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106136_ENCFF552WLT_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSM8106136_ENCFF664GFD_read-depth_normalized_signal_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSM8106136_ENCFF758XDW_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSM8106136_ENCLB067JEV_README.txt.gz 1.8 Kb (ftp)(http) TXT
Raw data are available in SRA

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