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Series GSE256615

Query DataSets for GSE256615

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR111IAZ)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq on transgenic worms expressing pbrm-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR111IAZ/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 24, 2024

Last update date

Oct 24, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL26672

Illumina NovaSeq 6000 (Caenorhabditis elegans)

Samples (2)

GSM8106248	TF ChIP-seq from whole organism (ENCLB807FCF)
GSM8106249	TF ChIP-seq from whole organism (ENCLB063YLY)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE256615_ENCFF038ZAZ_IDR_ranked_peaks_ce11.bed.gz	4.0 Mb	(ftp)(http)	BED
GSE256615_ENCFF213EXE_IDR_ranked_peaks_ce11.bed.gz	4.0 Mb	(ftp)(http)	BED
GSE256615_ENCFF388YES_signal_p-value_ce11.bigWig	209.4 Mb	(ftp)(http)	BIGWIG
GSE256615_ENCFF658HOH_fold_change_over_control_ce11.bigWig	256.1 Mb	(ftp)(http)	BIGWIG
GSE256615_ENCFF912RAF_IDR_thresholded_peaks_ce11.bigBed	146.6 Kb	(ftp)(http)	BIGBED
GSE256615_ENCFF915QWB_IDR_thresholded_peaks_ce11.bed.gz	57.0 Kb	(ftp)(http)	BED
GSE256615_ENCFF971POG_conservative_IDR_thresholded_peaks_ce11.bed.gz	51.6 Kb	(ftp)(http)	BED
GSE256615_ENCFF995ZEC_conservative_IDR_thresholded_peaks_ce11.bigBed	138.8 Kb	(ftp)(http)	BIGBED
GSE256615_RAW.tar	768.0 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA