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Series GSE259198 Query DataSets for GSE259198
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR530MRJ)
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq on transgenic flies expressing CG8319-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR530MRJ/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 26, 2024
Last update date Sep 25, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (3)
GSM8111273 TF ChIP-seq from whole organism (ENCLB406UHX)
GSM8111274 TF ChIP-seq from whole organism (ENCLB692IGJ)
GSM8111275 TF ChIP-seq from whole organism (ENCLB663BMU)
Relations
Reanalyzed by GSE278063

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE259198_ENCFF099SWY_control_normalized_signal_dm6.bigWig 16.5 Mb (ftp)(http) BIGWIG
GSE259198_ENCFF290FHG_control_normalized_signal_dm3.bigWig 15.1 Mb (ftp)(http) BIGWIG
GSE259198_ENCFF326DSJ_peaks_and_background_as_input_for_IDR_dm3.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE259198_ENCFF387CGQ_peaks_and_background_as_input_for_IDR_dm3.bed.gz 753.0 Kb (ftp)(http) BED
GSE259198_ENCFF441AFD_optimal_IDR_thresholded_peaks_dm6.bed.gz 83.1 Kb (ftp)(http) BED
GSE259198_ENCFF482WYV_optimal_IDR_thresholded_peaks_dm3.bigBed 175.0 Kb (ftp)(http) BIGBED
GSE259198_ENCFF497UDG_read-depth_normalized_signal_dm3.bigWig 14.6 Mb (ftp)(http) BIGWIG
GSE259198_ENCFF589GIN_peaks_and_background_as_input_for_IDR_dm6.bed.gz 751.8 Kb (ftp)(http) BED
GSE259198_ENCFF620WAP_peaks_and_background_as_input_for_IDR_dm6.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE259198_ENCFF626RZY_optimal_IDR_thresholded_peaks_dm6.bigBed 177.7 Kb (ftp)(http) BIGBED
GSE259198_ENCFF679OWC_signal_of_unique_reads_dm6.bigWig 16.6 Mb (ftp)(http) BIGWIG
GSE259198_ENCFF749CIR_signal_of_unique_reads_dm3.bigWig 14.6 Mb (ftp)(http) BIGWIG
GSE259198_ENCFF755YVI_read-depth_normalized_signal_dm6.bigWig 16.6 Mb (ftp)(http) BIGWIG
GSE259198_ENCFF829PUM_optimal_IDR_thresholded_peaks_dm3.bed.gz 80.7 Kb (ftp)(http) BED
GSE259198_RAW.tar 289.6 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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