|
| Status |
Public on Feb 27, 2024 |
| Title |
TF ChIP-seq from whole organism (ENCLB663BMU) |
| Sample type |
SRA |
| |
|
| Source name |
Drosophila melanogaster strain CG8319-GFP mixed sex prepupa insertion targeting D. melanogaster CG8319
|
| Organism |
Drosophila melanogaster |
| Characteristics |
antibody: CG8319
cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS413HYM (SAMN40086985)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS413HYM
note: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG8319
Sex: pooled male and female
dev stage: prepupa
age: unknown
donor_id: ENCDO455OMT
lab: Kevin White, UChicago
source: Kevin White
link: ENCBS413HYM at ENCODE; https://www.encodeproject.org/ENCBS413HYM/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
other: https://www.encodeproject.org/documents/f6b33eb0-f6a0-4585-913d-f3f5f4ac6afe/@@download/attachment/2015-3110.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR530MRJ/
***************
biological replicate number: 3
technical replicate number: 1
description: ChIP-seq on transgenic flies expressing CG8319-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
experiment encode accession: ENCSR530MRJ
assay title: TF ChIP-seq
assembly: dm6, dm3
possible controls: ENCSR557GAY
encode release date: 2016-07-06
lab: Kevin White, UChicago
library encode accession: ENCLB663BMU
fragmentation methods: sonication (Bioruptor generic)
size range: 200-800
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Feb 26, 2024 |
| Last update date |
Feb 27, 2024 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13304 |
| Series (1) |
| GSE259198 |
TF ChIP-seq from whole organism (ENCSR530MRJ) |
|
| Relations |
| BioSample |
SAMN40086985 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8111275_ENCFF028PTQ_read-depth_normalized_signal_dm6.bigWig |
16.4 Mb |
(ftp)(http) |
BIGWIG |
| GSM8111275_ENCFF328OID_peaks_and_background_as_input_for_IDR_dm3.bigBed |
1.3 Mb |
(ftp)(http) |
BIGBED |
| GSM8111275_ENCFF458FII_control_normalized_signal_dm3.bigWig |
15.0 Mb |
(ftp)(http) |
BIGWIG |
| GSM8111275_ENCFF552XYD_peaks_and_background_as_input_for_IDR_dm6.bed.gz |
753.7 Kb |
(ftp)(http) |
BED |
| GSM8111275_ENCFF654KYI_control_normalized_signal_dm6.bigWig |
16.4 Mb |
(ftp)(http) |
BIGWIG |
| GSM8111275_ENCFF680EBK_signal_of_unique_reads_dm6.bigWig |
16.3 Mb |
(ftp)(http) |
BIGWIG |
| GSM8111275_ENCFF688CMC_read-depth_normalized_signal_dm3.bigWig |
14.4 Mb |
(ftp)(http) |
BIGWIG |
| GSM8111275_ENCFF707XGB_signal_of_unique_reads_dm3.bigWig |
14.3 Mb |
(ftp)(http) |
BIGWIG |
| GSM8111275_ENCFF718HRB_peaks_and_background_as_input_for_IDR_dm3.bed.gz |
755.5 Kb |
(ftp)(http) |
BED |
| GSM8111275_ENCFF933DJF_peaks_and_background_as_input_for_IDR_dm6.bigBed |
1.2 Mb |
(ftp)(http) |
BIGBED |
| GSM8111275_ENCLB663BMU_README.txt.gz |
1.9 Kb |
(ftp)(http) |
TXT |
| Raw data are available in SRA |
