Expression profiling by high throughput sequencing
Summary
We performed spatial transcriptomics using Nanostring's DSP platform on Rhesus Macaque Hippocampal Brain sections obtained from one uninfected control and one chronically infected with SIVCL757. Our goals were to (1) determine which differentially expressed genes (DGEs) could be attributed to SIV infection in the rhesus hippocampus, (2) determine if spatial transcriptomics could serve as a tool to identify leukocyte infiltrates in the SIV infected brain and (3) examine localization of leukocytes at homeostatasis and chronic SIV infection
Overall design
NanoString Digital Spatial Profiling (DSP) with Whole Transcriptome Atlas (WTA)/Human NGS profiling was performed on 1 SIVCL757 chronically infected hippocampal brain section compared to 1 healthy control.
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