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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 26, 2024 |
| Title |
PMEL is involved in snake color pattern transition from blotches to stripes [scRNA-seq] |
| Organism |
Pantherophis guttatus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Our genomic, bulk and single-cell transcriptomic, functional, and developmental characterization of the Terrazzo corn snake color morph and the extensive comparison with wild-type snakes puts forward the dual role of PMEL in snake skin coloration, both in the differentiation of chromatophores during embryogenesis and the melanogenesis in melanophores.
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| Overall design |
1 X sample (single cell suspension) was harvested from 1 X E25 Pantherophis guttatus embryo
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| Contributor(s) |
Tzika A, Helleboid P |
| Citation(s) |
39227572 |
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| Submission date |
Mar 21, 2024 |
| Last update date |
Oct 25, 2024 |
| Contact name |
Athanasia Tzika |
| Organization name |
University of Geneva
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| Street address |
Athanasia Tzika, LANE - Sciences III, 30 quai Ernest Ansermet, 1211 Genève 4, Switzerland
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| City |
Geneva |
| ZIP/Postal code |
1211 |
| Country |
Switzerland |
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| Platforms (1) |
| GPL34323 |
HiSeq X Ten (Pantherophis guttatus) |
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| Samples (1) |
| GSM8158964 |
E25 Pantherophis guttatus dorsal skin single cells |
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| Relations |
| BioProject |
PRJNA1090495 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE262160_RAW.tar |
97.9 Mb |
(http)(custom) |
TAR (of H5AD) |
SRA Run Selector |
| Raw data are available in SRA |
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