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GEO accession:
Series GSE266070
Query DataSets for GSE266070
Status
Public on Jul 01, 2024
Title
RORC RNA Switch Mechanisms
Organism
Homo sapiens
Experiment type
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
39014073
Submission date
Apr 28, 2024
Last update date
Oct 08, 2024
Contact name
Hani Goodarzi
Organization name
UCSF
Department
Biochemistry and Biophysics
Street address
600 16th St, GH S312D
City
San Francisco
State/province
CA
ZIP/Postal code
94158
Country
USA
Platforms (1)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
Samples (104)
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GSM8239880
ZR-75-1_Ctrl_r1
GSM8239881
ZR-75-1_Ctrl_r2
GSM8239882
MCF7_Ctrl_r1
GSM8239883
MCF7_Ctrl_r2
GSM8239884
LS174T_Ctrl_r1
GSM8239885
LS174T_Ctrl_r2
GSM8239886
LNCaP _Ctrl_r1
GSM8239887
LNCaP _Ctrl_r2
GSM8239888
HEPG2_ctrl_r1
GSM8239889
HEPG2_ctrl_r2
GSM8239916
HEPG2_RORCWT_r1
GSM8239917
HEPG2_RORCWT_r2
GSM8239918
LNCaP _RORCWT_r1
GSM8239919
LNCaP _RORCWT_r2
GSM8239920
MCF7_RORCWT_NSC_r1
GSM8239921
MCF7_RORCWT_NSC_r2
GSM8239922
MCF7_RORCWT_G749_r1
GSM8239923
MCF7_RORCWT_G749_r2
GSM8239924
MCF7_RORCWT_DMSO_r1
GSM8239925
MCF7_RORCWT_DMSO_r2
GSM8239926
MCF7_RORCWT_NMDI14_r1
GSM8239927
MCF7_RORCWT_NMDI14_r2
GSM8239928
293T-RORCWT_r1
GSM8239929
293T-RORCWT_r2
GSM8239930
LS174T-RORCWT_r1
GSM8239931
LS174T-RORCWT_r2
GSM8239932
ZR-75-1_RORCWT_DMSO_r1
GSM8239933
ZR-75-1_RORCWT_DMSO_r2
GSM8239942
293T-oMK118_1
GSM8239943
293T-oMK118_2
GSM8239944
293T-oMK122_1
GSM8239945
293T-oMK122_2
GSM8239946
121_1_down
GSM8239947
121_1_up
GSM8239948
121_2_down
GSM8239949
121_2_up
GSM8239950
wt_1_down
GSM8239951
wt_1_up
GSM8239952
wt_2_down
GSM8239953
wt_2_up
GSM8239954
Functional_screen_bin1_r1_DNA
GSM8239955
Functional_screen_bin2_r1_DNA
GSM8239956
Functional_screen_bin3_r1_DNA
GSM8239957
Functional_screen_bin4_r1_DNA
GSM8239958
Functional_screen_bin5_r1_DNA
GSM8239959
Functional_screen_bin6_r1_DNA
GSM8239960
Functional_screen_bin7_r1_DNA
GSM8239961
Functional_screen_bin8_r1_DNA
GSM8239962
Functional_screen_bin1_r2_DNA
GSM8239963
Functional_screen_bin2_r2_DNA
GSM8239964
Functional_screen_bin3_r2_DNA
GSM8239965
Functional_screen_bin4_r2_DNA
GSM8239966
Functional_screen_bin5_r2_DNA
GSM8239967
Functional_screen_bin6_r2_DNA
GSM8239968
Functional_screen_bin7_r2_DNA
GSM8239969
Functional_screen_bin8_r2_DNA
GSM8239970
Mutagenesis_screen_bin1_r1_DNA
GSM8239971
Mutagenesis_screen_bin2_r1_DNA
GSM8239972
Mutagenesis_screen_bin3_r1_DNA
GSM8239973
Mutagenesis_screen_bin4_r1_DNA
GSM8239974
Mutagenesis_screen_bin5_r1_DNA
GSM8239975
Mutagenesis_screen_bin6_r1_DNA
GSM8239976
Mutagenesis_screen_bin7_r1_DNA
GSM8239977
Mutagenesis_screen_bin8_r1_DNA
GSM8239978
Mutagenesis_screen_bin1_r2_DNA
GSM8239979
Mutagenesis_screen_bin2_r2_DNA
GSM8239980
Mutagenesis_screen_bin3_r2_DNA
GSM8239981
Mutagenesis_screen_bin4_r2_DNA
GSM8239982
Mutagenesis_screen_bin5_r2_DNA
GSM8239983
Mutagenesis_screen_bin6_r2_DNA
GSM8239984
Mutagenesis_screen_bin7_r2_DNA
GSM8239985
Mutagenesis_screen_bin8_r2_DNA
GSM8239986
Functional_screen_bin1_r1_RNA
GSM8239987
Functional_screen_bin2_r1_RNA
GSM8239988
Functional_screen_bin3_r1_RNA
GSM8239989
Functional_screen_bin4_r1_RNA
GSM8239990
Functional_screen_bin5_r1_RNA
GSM8239991
Functional_screen_bin6_r1_RNA
GSM8239992
Functional_screen_bin7_r1_RNA
GSM8239993
Functional_screen_bin8_r1_RNA
GSM8239994
Functional_screen_bin1_r2_RNA
GSM8239995
Functional_screen_bin2_r2_RNA
GSM8239996
Functional_screen_bin3_r2_RNA
GSM8239997
Functional_screen_bin4_r2_RNA
GSM8239998
Functional_screen_bin5_r2_RNA
GSM8239999
Functional_screen_bin6_r2_RNA
GSM8240000
Functional_screen_bin7_r2_RNA
GSM8240001
Functional_screen_bin8_r2_RNA
GSM8240002
Mutagenesis_screen_bin1_r1_RNA
GSM8240003
Mutagenesis_screen_bin2_r1_RNA
GSM8240004
Mutagenesis_screen_bin3_r1_RNA
GSM8240005
Mutagenesis_screen_bin4_r1_RNA
GSM8240006
Mutagenesis_screen_bin5_r1_RNA
GSM8240007
Mutagenesis_screen_bin6_r1_RNA
GSM8240008
Mutagenesis_screen_bin7_r1_RNA
GSM8240009
Mutagenesis_screen_bin8_r1_RNA
GSM8240010
Mutagenesis_screen_bin1_r2_RNA
GSM8240011
Mutagenesis_screen_bin2_r2_RNA
GSM8240012
Mutagenesis_screen_bin3_r2_RNA
GSM8240013
Mutagenesis_screen_bin4_r2_RNA
GSM8240014
Mutagenesis_screen_bin5_r2_RNA
GSM8240015
Mutagenesis_screen_bin6_r2_RNA
GSM8240016
Mutagenesis_screen_bin7_r2_RNA
GSM8240017
Mutagenesis_screen_bin8_r2_RNA
This SuperSeries is composed of the following SubSeries:
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GSE266051
DMS-MaPseq of RORC reporters and endogeneous RORC locus
GSE266054
DMS-MaPseq of RORC reporters and endogeneous RORC locus [reporter cell lines]
GSE266056
DMS-MaPseq of RORC reporters and endogeneous RORC locus [reporter mutants]
GSE266057
CRISPRi Screen for Investigating the RORC RNA Switch Mechanisms in Jurkat Cells
GSE266058
Massively parallel reporter assay for identification of RNA switches
Relations
BioProject
PRJNA1105624
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary data files not provided
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