|
| Status |
Public on Jul 01, 2024 |
| Title |
MCF7_RORCWT_NMDI14_r2 |
| Sample type |
SRA |
| |
|
| Source name |
MCF7_RORCWT_NMDI14
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: MCF7
cell type: breast cancer
genotype: RORCWT reproter expression
treatment: NMDI14
|
| Treatment protocol |
Cells were treated with NMDI14 (50 uM), NSC95397 (10 uM) and G749 (2 uM) for 24 hours.
|
| Growth protocol |
All the cell lines were maintained in DMEM with 10% FBS and antibiotics under humidified atmosphere with 5% CO2 at 37C
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with Trizol and 10 ug total RNA was used for downstream Dnase treatment and reverse transcription
Targeted PCR was perforem with Phusion to add illumina sequencing adaptors
|
| |
|
| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
RORC RNA switch DMS reactivity
DMS-MaPseq_RORC_reporter_cell_lines.csv
|
| Data processing |
something
Library strategy: DMS-MaPseq
|
| |
|
| Submission date |
Apr 28, 2024 |
| Last update date |
Jul 01, 2024 |
| Contact name |
Hani Goodarzi |
| Organization name |
UCSF
|
| Department |
Biochemistry and Biophysics
|
| Street address |
600 16th St, GH S312D
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
| |
|
| Platform ID |
GPL20301 |
| Series (2) |
| GSE266054 |
DMS-MaPseq of RORC reporters and endogeneous RORC locus [reporter cell lines] |
| GSE266070 |
RORC RNA Switch Mechanisms |
|
| Relations |
| BioSample |
SAMN41106322 |
| SRA |
SRX24387286 |
