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Series GSE271371 Query DataSets for GSE271371
Status Public on Jul 09, 2024
Title Differential tumor immune microenvironment coupled with tumor progression or tumor eradication in HPV-antigen expressing squamous cell carcinoma (SCC) models.
Organism Mus musculus
Experiment type Other
Summary Human papilloma virus (HPV) is an etiological factor of head and neck squamous cell carcinoma (HNSCC). To investigate the role of HPV antigen in anti-tumor immunity, we established mouse models by expressing HPV16 E6 and E7 in a SCC tumor cell line. We obtained two HPV antigen-expressing clones (C-225 and C-100) transplantable into C57BL/6 recipients. We found that C-225 elicited complete eradication in C57BL/6 mice (eradicated), whereas C-100 grew progressively (growing). We examined immune tumor microenvironment (TME) using flow cytometry and found that eradicated or growing tumors exhibited differential immune profiles that may influence the outcome of anti-tumor immunity. Surprisingly, the percentage of CD8 and CD4 tumor-infiltrating lymphocytes (TILs) was much higher in growing (C-100) than eradicated (C-225) tumor. However, the TILs upregulated PD-1 and LAG-3 more potently and exhibited impaired effector functions in growing tumor compared to their counterparts in eradicated tumor. C-225 TME is highly enriched with myeloid cells, especially polymorphonuclear (PMN) myeloid-derived suppressor cells (MDSC), whereas the percentage of M-MDSC and tumor-associated macrophages (TAMs) was much higher in C-100 TME, especially M2-TAMs (CD206+). The complete eradication of C-225 depended on CD8 T cells and elicited anti-tumor memory responses upon secondary tumor challenge. We employed DNA sequencing to identify differences in the T cell receptor of peripheral blood lymphocytes pre- and post-secondary tumor challenge. Lastly, C-225 and C-100 tumor lines harbored different somatic mutations. Overall, we uncovered differential immune TME that may underlie the divergent outcomes of anti-tumor immunity by establishing two SCC tumor lines, both of which express HPV16 E6 and E7 antigens. Our experimental models may provide a platform for pinpointing tumor-intrinsic versus host-intrinsic differences in orchestrating an immunosuppressive TME in HNSCCs and for identifying new targets that render tumor cells vulnerable to immune attack.
 
Overall design PBMCs were isolated from peripheral blood samples collected from C-225 tumor-bearing mice (n=7) on day 102 (pre-PBMC) and day 116 (post-PBMC) after the first tumor inoculation. Each mouse has 2 samples sequenced including pre- and post-PBMC. In total, 14 samples were sequenced for 7 tumor-bearing mice. RBC was lysed as described above, and genomic DNA was purified and used for TCRb sequencing with ImmunoSEQ platform by Adaptive Biotechnologies. ImmunoSEQ Analyzer was employed to retrieve, process, and track the TCRb sequencing data. The data was further analyzed using R version 4.3.0 as described previously (24). Clonal proportion and clonotype tracking were analyzed with Immunarch (1.0.0) in R version 4.2.0.
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Authors state "Adaptive Biotechnology does not release raw data and provides only processed data files to the customers."
 
Contributor(s) Shivarudrappa AH, Wang JH
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Submission date Jul 02, 2024
Last update date Jul 09, 2024
Contact name Jing Hong Wang
E-mail(s) jhw51@pitt.edu
Phone 4128647728
Organization name University of Pittsburgh
Department Department of Medicine
Lab Jing Hong Wang
Street address 5117 Centre Ave, Suite 2.35
City Pittsburgh
State/province PA
ZIP/Postal code 15213-1862
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (14)
GSM8375644 Pre 1
GSM8375645 Pre 2
GSM8375646 Pre 3
Relations
BioProject PRJNA1131003

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Supplementary file Size Download File type/resource
GSE271371_RAW.tar 21.9 Mb (http)(custom) TAR (of TSV)
Raw data not provided for this record

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