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Series GSE273140 Query DataSets for GSE273140
Status Public on Aug 02, 2024
Title A strain of Streptococcus mitis inhibits biofilm formation of caries pathogens via abundant hydrogen peroxide production
Organisms Streptococcus mutans; Streptococcus mitis
Experiment type Expression profiling by high throughput sequencing
Summary Our group recently transcriptomically characterized coculture growth between Streptococcus mutans and several species of commensal streptococci (Rose et al, 2023; Choi et al 2024). One interaction that stood out was with Streptococcus mitis ATCC 49456, which completely inhibited the growth of S. mutans during biofilm formation. This is due to abudant hydrogen peroxide production by S. mitis ATCC 49456, 3-5x higher than other oral commensal streptococci we have worked with. To understand how the transcriptome of S. mutans is modified in coculture with a high hydrogen peroxide producer, we evaluated the transcriptome during monoculture or coculture growth between the two strains. Our results show differential gene expression (DEGs) in S. mutans that follows other trends we have documented previously with other commensal Streptococcus species, as well as DEGs specific to the interaction with S. mitis.
 
Overall design Streptococcus mutans UA159 and Streptococcus mitis ATCC49456 were grown either as monocultures or cocultures, inoculated 1:1. All samples were grown in TYG. Cultures were harvested during mid exponential growth phase (OD600 nm = 0.4). Resulting comparisions included differentially expressed genes (DEGs) between monoculture and coculture growth for each strain.
 
Contributor(s) Williams I, Tuckerman J, Peters D, Kaspar J
Citation(s) 39149263
Submission date Jul 25, 2024
Last update date Sep 11, 2024
Contact name Justin Ray Kaspar
E-mail(s) kaspar.17@osu.edu
Phone 6142923773
Organization name The Ohio State University
Department Biosciences
Lab Kaspar
Street address 305 W 12th Ave
City Columbus
State/province OH
ZIP/Postal code 43210
Country USA
 
Platforms (3)
GPL34744 NextSeq 2000 (Streptococcus mutans)
GPL34745 NextSeq 2000 (Streptococcus mitis)
GPL34746 NextSeq 2000 (Streptococcus mitis; Streptococcus mutans)
Samples (9)
GSM8422447 SMU_Mono_1
GSM8422448 SMU_Mono_2
GSM8422449 SMU_Mono_3
Relations
BioProject PRJNA1140230

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE273140_Smitisrawcounts.csv.gz 29.8 Kb (ftp)(http) CSV
GSE273140_Smitisresults.xlsx 214.0 Kb (ftp)(http) XLSX
GSE273140_Smutansrawcounts.csv.gz 30.8 Kb (ftp)(http) CSV
GSE273140_Smutansresults.xlsx 581.2 Kb (ftp)(http) XLSX
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Raw data are available in SRA

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