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| Status |
Public on Mar 28, 2014 |
| Title |
Quantification of allele-specific expression patterns in Arabidopsis by tag profiling |
| Organisms |
Arabidopsis thaliana; Arabidopsis lyrata; Arabidopsis thaliana x Arabidopsis lyrata |
| Experiment type |
Expression profiling by high throughput sequencing
Genome variation profiling by high throughput sequencing
|
| Summary |
we demonstrate that 3' end tag profiling vi deep sequencing is a powerful approach to mesure allele-specific expression genome-wide.
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| |
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| Overall design |
examination of gene expression in A. thaliana, A. lyrata and the F1 hybrid
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| |
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| Contributor(s) |
Van Poecke R, Vuylsteke M |
| Citation missing |
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| |
| Submission date |
Mar 28, 2011 |
| Last update date |
Mar 28, 2014 |
| Contact name |
Marnik Vuylsteke |
| E-mail(s) |
marnik.vuylsteke@psb.ugent.be
|
| Phone |
++32 9 3313860
|
| Fax |
++32 9 3313809
|
| Organization name |
VIB
|
| Department |
Plant Systems Biology
|
| Lab |
Quantitative Genomics
|
| Street address |
Technologypark 927
|
| City |
Gent |
| ZIP/Postal code |
9052 |
| Country |
Belgium |
| |
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| Platforms (3) |
| GPL10142 |
454 GS FLX (Arabidopsis lyrata) |
| GPL13337 |
454 GS FLX (Arabidopsis thaliana) |
| GPL13338 |
454 GS FLX (Arabidopsis thaliana x Arabidopsis lyrata) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA139657 |
