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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 28, 2014 |
| Title |
A. lyrata 454 |
| Sample type |
SRA |
| |
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| Source name |
leaf
|
| Organism |
Arabidopsis lyrata |
| Characteristics |
tissue: leaf
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated using Trizol Reagent (Life Technologies, Gaithersburg, MD)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
454 GS FLX |
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| Data processing |
trimmed reads and tag removed
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| Submission date |
Mar 28, 2011 |
| Last update date |
Mar 28, 2014 |
| Contact name |
Marnik Vuylsteke |
| E-mail(s) |
marnik.vuylsteke@psb.ugent.be
|
| Phone |
++32 9 3313860
|
| Fax |
++32 9 3313809
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| Organization name |
VIB
|
| Department |
Plant Systems Biology
|
| Lab |
Quantitative Genomics
|
| Street address |
Technologypark 927
|
| City |
Gent |
| ZIP/Postal code |
9052 |
| Country |
Belgium |
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| Platform ID |
GPL10142 |
| Series (1) |
| GSE28211 |
Quantification of allele-specific expression patterns in Arabidopsis by tag profiling |
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| Relations |
| BioSample |
SAMN02198614 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM698501_all_lyr_reads.fa.gz |
7.3 Mb |
(ftp)(http) |
FA |
| GSM698501_all_lyr_reads_freq.txt.gz |
2.1 Mb |
(ftp)(http) |
TXT |
| Processed data provided as supplementary file |
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