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| Status |
Public on Mar 30, 2011 |
| Title |
E0-4_H3K4Me3 |
| Project |
modENCODE
|
| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
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| Summary |
modENCODE_submission_771
This submission comes from a modENCODE project of Kevin White. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: The White Lab is aiming to map the association of all the Transcription Factors (TF) and DNA associated proteins on the genome of Drosophila melanogaster. The main technique that will be used for this purpose is chromatin immunoprecipitation-on-chip (ChIP-on-chip) utilizing whole-genome tiling arrays. The data generated by ChIP-chip experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested TF.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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| |
|
| Overall design |
EXPERIMENT TYPE: CHIP-chip. BIOLOGICAL SOURCE: Strain: Y cn bw sp; Developmental Stage: E0-4; Genotype: y[1] oc[R3.2]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] lab[R4.2] MstProx[1] GstD5[1] Rh6[1]; Sex: Unknown; NUMBER OF REPLICATES: 9; EXPERIMENTAL FACTORS: Developmental Stage E0-4; Antibody H3K4me3 (target is H3K4me3); Strain Y cn bw sp
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| Web link |
http://www.modencode.org
http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
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| |
|
| Contributor(s) |
White K, Negre N, Bild N |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA63467 |
| |
| Submission date |
Mar 29, 2011 |
| Last update date |
Aug 19, 2013 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
help@modencode.org
|
| Phone |
416-673-8579
|
| Organization name |
Ontario Institute for Cancer Research
|
| Lab |
modENCODE DCC
|
| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
|
| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
| |
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| Platforms (3) |
| GPL6949 |
Agilent-019182 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 1 of 3 |
| GPL6950 |
Agilent-019183 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 2 of 3 |
| GPL6951 |
Agilent-019184 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 3 of 3 |
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| Samples (9)
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| GSM699252 |
E0-4_H3K4Me3_1_1 extraction1_array1 |
| GSM699253 |
E0-4_H3K4Me3_1_1 extraction1_array2 |
| GSM699254 |
E0-4_H3K4Me3_1_1 extraction1_array3 |
| GSM699255 |
E0-4_H3K4Me3_1_2 extraction2_array1 |
| GSM699256 |
E0-4_H3K4Me3_1_2 extraction2_array2 |
| GSM699257 |
E0-4_H3K4Me3_1_2 extraction2_array3 |
| GSM699258 |
E0-4_H3K4Me3_1_3 extraction3_array1 |
| GSM699259 |
E0-4_H3K4Me3_1_3 extraction3_array2 |
| GSM699260 |
E0-4_H3K4Me3_1_3 extraction3_array3 |
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