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Series GSE30434 Query DataSets for GSE30434
Status Public on Jul 23, 2011
Title ChIP-chip for histone modifications in hESCs and differentiated hESCs
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary The objective of this study was to identify how histone modifications are differentially marked at promoter and enhancer elements in hESCs before and after differentiation to understand the regulatory mechanisms that defined pluripotency and early differentiation.
 
Overall design ChIP for promoter and enhancer histone modifications were conducted relative to input DNA in hESCs and hESCs treated with BMP4
 
Contributor(s) Hawkins RD, Hon GC, Ren B
Citation(s) 21876557
Submission date Jul 06, 2011
Last update date Mar 21, 2017
Contact name Gary Chung Hon
Organization name UT Southwestern
Department OB/GYN
Street address 5323 Harry Hines Blvd.
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platforms (29)
GPL4910 [Hs35b_P01R] Affymetrix Human Tiling 2.0R Set, Array 1
GPL4911 [Hs35b_P02R] Affymetrix Human Tiling 2.0R Set, Array 2
GPL4912 [Hs35b_P03R] Affymetrix Human Tiling 2.0R Set, Array 3
Samples (94)
GSM754843 hESC H3K4me1 Hs35b_P01R
GSM754844 hESC H3K4me1 Hs35b_P02R
GSM754845 hESC H3K4me1 Hs35b_P03R
Relations
BioProject PRJNA143539

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30434_RAW.tar 9.9 Gb (http)(custom) TAR (of CEL, GFF, PAIR)
Processed data provided as supplementary file
Processed data included within Sample table
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