|
| Status |
Public on Jul 14, 2011 |
| Title |
[E-MTAB-587] PCR_artifacts |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
WARNING: This library was yield low amount of material and it was over-amplified by PCR. This libraries are used study the robustness of several statitical methods against PCR artifacts. ChIP experiments were performed on Arabidopsis wildtype inflorescences using an antibody raised against a C-terminal peptide of SEP3.
ArrayExpress Release Date: 2011-04-27
Publication Title: ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions
Publication Author List: Jose M. Muino, Kerstin Kaufmann, Roeland C. H. J. van Ham, Gerco C. Angenent, and Pawel Krajewski
Person Roles: submitter
Person Last Name: Muino
Person First Name: Jose
Person Mid Initials: M.
Person Email: jose.muino@wur.nl
Person Phone: 0317-481122
Person Address: Droevendaalsesteeg 1, P.O. Box 16, 6700 AA Wageningen, The Netherlands
Person Affiliation: Plant Research International B.V.
|
| |
|
| Overall design |
Experimental Design: development_or_differentiation_design
Experimental Design: in_vivo_design
Experimental Design: ChiP-seq
Experimental Factor Name: CHIP-ANTIBODY
Experimental Factor Name: PCR_amplification
Experimental Factor Type: Chip-antibody
Experimental Factor Type: PCR_amplification
|
| |
|
| Citation(s) |
21554688 |
| |
| Submission date |
Jul 12, 2011 |
| Last update date |
May 15, 2019 |
| Organization |
European Bioinformatics Institute |
| E-mail(s) |
miamexpress@ebi.ac.uk
|
| Lab |
ArrayExpress
|
| Street address |
Wellcome Trust Genome Campus
|
| City |
Hinxton |
| State/province |
Cambridgeshire |
| ZIP/Postal code |
CB10 1SD |
| Country |
United Kingdom |
| |
|
| Platforms (1) |
| GPL9062 |
Illumina Genome Analyzer (Arabidopsis thaliana) |
|
| Samples (3) |
| GSM759580 |
[E-MTAB-587] Inflorescences-Low_amount_material-SEP3_IP-rep1 |
| GSM759581 |
[E-MTAB-587] Inflorescences-Low_amount_material-SEP3_IP-rep2 |
| GSM759582 |
[E-MTAB-587] Inflorescences-Low_amount_material-OverAmplified-SEP3_IP-rep1 |
|
| Relations |
| SRA |
ERP000559 |
| ArrayExpress |
E-MTAB-587 |
| BioProject |
PRJNA144527 |
