|
| Status |
Public on Jul 19, 2011 |
| Title |
Mammalian X upregulation |
| Organisms |
Mus musculus; Mus musculus x Mus spretus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by genome tiling array
Expression profiling by array
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
22019781, 23523075, 25887447, 26248554 |
| |
| Submission date |
Jul 18, 2011 |
| Last update date |
Oct 09, 2019 |
| Contact name |
Xinxian Deng |
| E-mail(s) |
dengx2@u.washington.edu
|
| Organization name |
University of Washington
|
| Department |
Laboratory Medicine and Pathology
|
| Lab |
HSB C526
|
| Street address |
1959 NE Pacific St.
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195 |
| Country |
USA |
| |
|
| Platforms (9)
|
| GPL1261 |
[Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array |
| GPL6246 |
[MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version] |
| GPL9185 |
Illumina Genome Analyzer (Mus musculus) |
| GPL9833 |
NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design |
| GPL10129 |
NimbleGen Mouse 2.1 M array 10 of 10 |
| GPL16143 |
NimbleGen Mouse 2.1M deluxe promoter array (ver. 2) |
| GPL16616 |
Illumina HiSeq 2000 (Mus musculus x Mus spretus) |
| GPL16617 |
Illumina Genome Analyzer IIx (Mus musculus x Mus spretus) |
| GPL16733 |
NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design |
|
| Samples (60)
|
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE30689 |
Enrichment profiles of Ser-5 phosphorylated RNA polymerase II (PolII S5p) in mouse female ES cells |
| GSE30690 |
Expression analysis in mouse female PGK12.1 ES cells by RNA-seq |
| GSE44251 |
Expression data from undifferentiated and differentiated mouse female ES cells PGK12.1 |
| GSE44252 |
Expression data from mouse ES cells after control RNAi (scramble siRNAs) or specific RNAi (siRNAs for specific genes) treatment |
| GSE44255 |
Allele-specific maps of RNA polymerase II phosphorylated at serine 5 in mouse cultured hybrid cells and mouse hybrid brain |
| GSE44835 |
Upregulation of the mammalian X chromosome is associated with enhanced transcription initiation, MOF-mediated H4K16 acetylation, and longer RNA half-life |
|
| Relations |
| BioProject |
PRJNA144109 |
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