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Series GSE31230 Query DataSets for GSE31230
Status Public on Aug 19, 2011
Title Identification of natural diterpenes as inducers of resistance to bacterial wilt disease in tobacco, tomato, and Arabidopsis
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary The soil-borne bacterial pathogen Ralstonia solanacearum invades a broad range of plants through roots, resulting in wilting of the plant, but no effective protection against this disease has been developed. Two R. solanacearum resistance-inducing compounds were biochemically isolated from tobacco and identified as sclareol and cis-abienol, diterpenes. When exogenously applied to their roots, these diterpenes induced resistance to R. solanacearum in tobacco, tomato, and Arabidopsis plants without exhibiting any antimicrobial activity. Structure-activity correlation analysis of sclareol-related compounds revealed that the hydroxyl group at the eighth carbon position is responsible for the activity for inducing resistance. Microarray analysis identified many sclareol-responsive Arabidopsis genes, such as those encoding or with role in ABC transporters, biosynthesis and signaling of defense-related signal molecules, and mitogen-activated protein kinase (MAPK) cascades. Sclareol-induced R. solanacearum resistance was partially compromised in Arabidopsis mutants defective in the ABC transporter AtPDR12, the MAPK MPK3, and ethylene and abscisic acid signaling pathways. Transgenic tobacco plants in which NtPDR1, a tobacco homolog of AtPDR12, was silenced exhibited also reduced resistance. These results suggest that multiple host factors are involved in resistance to R. solanacearum induced by sclareol and its related compounds and that these compounds can be used to protect crops from bacterial wilt disease.
 
Overall design Genes that were preferentially expressed in Arabidopsis roots 2 hours after treatment with sclareol were explored. The microarray analysis was performed in triplicate.
 
Contributor(s) Shigemi S
Citation(s) 22685082
Submission date Aug 05, 2011
Last update date Apr 19, 2017
Contact name Shigemi Seo
E-mail(s) sseo71@affrc.go.jp
Phone +81-(0)29-838-7440
Organization name National Institute of Agrobiological Sciences
Department Plant and Microbial Research Unit, Division of Plant and Microbial Sciences
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platforms (1)
GPL9020 Agilent-021169 Arabidopsis 4 Oligo Microarray (V4) (Feature Number version)
Samples (6)
GSM774195 Roots_methanol_2h_rep.1
GSM774196 Roots_methanol_2h_rep.2
GSM774197 Roots_methanol_2h_rep.3
Relations
BioProject PRJNA146067

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE31230_Normalized_merged_data.txt.gz 2.2 Mb (ftp)(http) TXT
GSE31230_RAW.tar 59.6 Mb (http)(custom) TAR (of TXT)
GSE31230_up-regulated_genes.txt.gz 23.6 Kb (ftp)(http) TXT
GSE31230_up-regulated_genes_categorized.txt.gz 23.2 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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