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Status |
Public on Apr 03, 2012 |
Title |
RNA-Seq on Illumina platform of Drosophila DrosDel deficiency lines |
Organism |
Drosophila melanogaster |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
RNA-Seq reads of DrosDel deficiency (Df/+) and parental strain diploid flies along with spike-in controls was performed on the Illumina platform. Samples are named in this dataset according to the following sample naming scheme: tissue_genotype shorthand_sex_biological replicate #_platform.
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Overall design |
We sequenced mRNA from pools of female or male DrosDel and w1118 (parental strain for the Df/+ flies).
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Contributor(s) |
Malone JH, Cho DY, Mattiuzzo NR, Artieri CG, Jiang L, Dale RK, Smith HE, McDaniel J, Munro S, Salit M, Andrews J, Przytycka TM, Oliver B |
Citation(s) |
- Malone JH, Cho DY, Mattiuzzo NR, Artieri CG et al. Mediation of Drosophila autosomal dosage effects and compensation by network interactions. Genome Biol 2012 Apr 24;13(4):r28. PMID: 22531030
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Submission date |
Aug 19, 2011 |
Last update date |
May 15, 2019 |
Contact name |
Brian Oliver |
E-mail(s) |
briano@nih.gov
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Phone |
301-204-9463
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Organization name |
NIDDK, NIH
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Department |
LBG
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Lab |
Developmental Genomics
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Street address |
50 South Drive
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City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20892 |
Country |
USA |
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Platforms (1) |
GPL9061 |
Illumina Genome Analyzer II (Drosophila melanogaster) |
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Samples (9)
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GSM783080 |
Wholeflies_w1118_Female_R3_Illumina |
GSM783081 |
Wholeflies_w1118_Male_R2_Illumina (ln7) |
GSM783082 |
Wholeflies_w1118_Male_R2_Illumina (ln8) |
GSM783083 |
Wholeflies_ED7007_Female_R2_Illumina |
GSM783084 |
Wholeflies_ED7007_Male_R3_Illumina |
GSM783085 |
Wholeflies_ED489_Female_R3_Illumina |
GSM783086 |
Wholeflies_ED489_Male_R1_Illumina |
GSM783087 |
Wholeflies_ED499_Female_R2_Illumina |
GSM783088 |
Wholeflies_ED499_Male_R1_Illumina |
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This SubSeries is part of SuperSeries: |
GSE31407 |
Drosophila DrosDel deficiency and diploid control flies |
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Relations |
SRA |
SRP007889 |
BioProject |
PRJNA154977 |