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Series GSE31549 Query DataSets for GSE31549
Status Public on Apr 03, 2012
Title RNA-Seq on Illumina platform of Drosophila DrosDel deficiency lines
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary RNA-Seq reads of DrosDel deficiency (Df/+) and parental strain diploid flies along with spike-in controls was performed on the Illumina platform. Samples are named in this dataset according to the following sample naming scheme: tissue_genotype shorthand_sex_biological replicate #_platform.
 
Overall design We sequenced mRNA from pools of female or male DrosDel and w1118 (parental strain for the Df/+ flies).
 
Contributor(s) Malone JH, Cho DY, Mattiuzzo NR, Artieri CG, Jiang L, Dale RK, Smith HE, McDaniel J, Munro S, Salit M, Andrews J, Przytycka TM, Oliver B
Citation(s)
  • Malone JH, Cho DY, Mattiuzzo NR, Artieri CG et al. Mediation of Drosophila autosomal dosage effects and compensation by network interactions. Genome Biol 2012 Apr 24;13(4):r28. PMID: 22531030
Submission date Aug 19, 2011
Last update date May 15, 2019
Contact name Brian Oliver
E-mail(s) briano@nih.gov
Phone 301-204-9463
Organization name NIDDK, NIH
Department LBG
Lab Developmental Genomics
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL9061 Illumina Genome Analyzer II (Drosophila melanogaster)
Samples (9)
GSM783080 Wholeflies_w1118_Female_R3_Illumina
GSM783081 Wholeflies_w1118_Male_R2_Illumina (ln7)
GSM783082 Wholeflies_w1118_Male_R2_Illumina (ln8)
This SubSeries is part of SuperSeries:
GSE31407 Drosophila DrosDel deficiency and diploid control flies
Relations
SRA SRP007889
BioProject PRJNA154977

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE31549_RAW.tar 3.1 Gb (http)(custom) TAR (of SAM)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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