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Series GSE31650 Query DataSets for GSE31650
Status Public on Aug 26, 2011
Title Multiple bypass pathways of Hsk1 kinase essential for initiation of DNA replication in fission yeast
Organism Schizosaccharomyces pombe
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary Cdc7/Hsk1 is a conserved kinase required for initiation of DNA replication that potentially regulates timing and locations of replication origin firing. Here, we show that viability of fission yeast hsk1∆ cells can be restored by loss of mrc1, which is required for maintenance of replication fork integrity, by cds1∆, or by a checkpoint-deficient mutant of mrc1. In these mutants, normally inactive origins are activated in the presence of HU and binding of Cdc45 to MCM is stimulated. mrc1∆ bypasses hsk1∆ more efficiently because of its checkpoint-independent inhibitory functions. Unexpectedly, hsk1∆ is viable at 37°C. More DNA is synthesized, and some dormant origins fire in the presence of HU at 37°C. On the other hand, hsk1∆ bypass strains grow poorly at 25°C compared to at higher temperatures. Our results show that Hsk1 functions for DNA replication can be bypassed by different genetic backgrounds as well as under varied physiological conditions, providing additional evidence for plasticity of the replication program in eukaryotes.
BrdU incorporation profiles at early S-phase in mrc1∆, cds1∆ and hsk1-89 mutants.
 
Overall design BrdU-incorporated region at early S-phase vs. Input at Metaphase sample
 
Contributor(s) Matsumoto S, Hayano M, Kanoh Y, Masai H
Citation(s) 22024164
Submission date Aug 25, 2011
Last update date May 27, 2014
Contact name Yutaka Kanoh
E-mail(s) kanou-yt@igakuken.or.jp
Organization name Tokyo Metropolitan Institute of Medical Science
Department Genome Medicine
Lab Genome Dynamics Projec
Street address 2-1-6 Kamikitazawa, Setagaya-ku
City Tokyo
ZIP/Postal code 156-8506
Country Japan
 
Platforms (1)
GPL7715 [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array
Samples (4)
GSM785947 BrdUIP_mrc1∆_60minHU
GSM785948 BrdUIP_cds1∆_60minHU
GSM785949 BrdUIP_hsk1ts_30C_60minHU
Relations
BioProject PRJNA145303

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE31650_20080521_Input_nda3cs_Metaphase.CEL.gz 12.5 Mb (ftp)(http) CEL
GSE31650_RAW.tar 64.1 Mb (http)(custom) TAR (of CEL, TXT)
Processed data provided as supplementary file

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