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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 01, 2008 |
| Title |
[Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Schizosaccharomyces pombe |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer's web site
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| Description |
Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
The GeneChip® S. pombe Tiling 1.0FR Array is designed for identifying novel transcripts, mapping sites of protein/DNA interaction in chromatin immunoprecipitation (ChIP) experiments, and other whole-genome experiments.
The S. pombe 1.0FR Array is a single array comprised of over 1.2 million perfect match/mismatch probe pairs tiled through the complete Schizosaccharomyces pombe genome. Sequence information for chromosomes 1 to 3 and telomere clones was drawn from the Wellcome Trust Sanger Institute (September 2004). Probes are tiled for both strands of the genome at an average of 20 base pair resolution, as measured from the central position of adjacent 25-mer oligos, creating an overlap of approximately 5 base pairs on adjacent probes.
BPMAP and other files can be downloaded from the Affymetrix Web site below.
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| Web link |
http://www.affymetrix.com/catalog/131500/AFFY/S.-pombe-Tiling-1.0FR-Array#1_1
http://www.affymetrix.com/support/technical/libraryfilesmain.affx
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| Submission date |
Dec 01, 2008 |
| Last update date |
May 27, 2014 |
| Organization |
Affymetrix, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov, support@affymetrix.com
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| Phone |
888-362-2447
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| URL |
http://www.affymetrix.com/index.affx
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| Street address |
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| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
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| Samples (544)
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GSM346930, GSM346931, GSM346932, GSM346933, GSM346934, GSM346935
GSM346936, GSM346937, GSM371858, GSM371859, GSM371860, GSM371861, GSM371862, GSM371863, GSM401392, GSM401393, GSM401394, GSM401395, GSM401396, GSM401397, GSM401398, GSM401399, GSM401400, GSM414911, GSM414912, GSM425513, GSM459494, GSM459495, GSM459496, GSM459497, GSM459498, GSM459499, GSM459500, GSM459501, GSM459502, GSM459503, GSM459504, GSM459505, GSM459506, GSM459507, GSM459508, GSM459509, GSM459510, GSM459511, GSM459512, GSM459513, GSM459514, GSM459515, GSM459516, GSM459517, GSM459518, GSM468647, GSM468648, GSM586222, GSM586223, GSM600374, GSM600375, GSM600376, GSM600377, GSM600378, GSM600379, GSM600380, GSM600381, GSM600382, GSM600383, GSM600384, GSM600385, GSM600386, GSM600387, GSM600388, GSM600389, GSM600390, GSM600391, GSM600392, GSM600393, GSM600394, GSM600395, GSM600396, GSM600397, GSM600398, GSM600399, GSM600400, GSM600401, GSM600402, GSM697666, GSM697667, GSM697668, GSM697669, GSM697670, GSM697671, GSM697672, GSM697673, GSM715385, GSM715386, GSM715387, GSM715388, GSM715389, GSM715390, GSM715391, GSM715392, GSM715393, GSM715394, GSM755983, GSM755984, GSM770620, GSM770621, GSM770622, GSM770623, GSM770624, GSM770625, GSM785933, GSM785934, GSM785935, GSM785936, GSM785947, GSM785948, GSM785949, GSM785950, GSM789846, GSM789847, GSM789848, GSM789849, GSM800498, GSM800499, GSM847760, GSM847761, GSM847762, GSM847763, GSM847764, GSM847765, GSM847766, GSM874382, GSM874383, GSM874384, GSM881315, GSM881316, GSM881317, GSM881318, GSM881319, GSM881320, GSM881321, GSM881322, GSM881323, GSM881324, GSM881325, GSM881326, GSM881327, GSM881328, GSM881329, GSM881330, GSM881331, GSM881332, GSM882080, GSM882081, GSM882082, GSM882083, GSM882084, GSM882085, GSM882086, GSM882087, GSM882088, GSM882089, GSM882090, GSM882091, GSM882092, GSM882093, GSM882094, GSM882095, GSM882096, GSM882097, GSM882098, GSM882099, GSM882100, GSM882101, GSM882102, GSM882103, GSM882104, GSM882105, GSM882106, GSM882107, GSM882108, GSM882109, GSM882110, GSM882111, GSM882112, GSM882113, GSM882114, GSM882115, GSM882116, GSM882117, GSM882118, GSM882119, GSM882120, GSM882121, GSM882122, GSM882123, GSM882124, GSM882125, GSM882126, GSM882127, GSM882128, GSM882129, GSM882130, GSM882131, GSM882132, GSM882133, GSM882134, GSM882135, GSM882136, GSM882137, GSM882138, GSM882139, GSM882140, GSM882141, GSM882142, GSM882143, GSM907140, GSM907141, GSM907142, GSM907143, GSM931747, GSM931748, GSM931749, GSM931750, GSM931751, GSM931752, GSM946218, GSM946219, GSM946220, GSM1016465, GSM1017852, GSM1017853, GSM1017854, GSM1017855, GSM1017856, GSM1017857, GSM1017858, GSM1017859, GSM1017860, GSM1017861, GSM1017862, GSM1017863, GSM1017864, GSM1017865, GSM1017866, GSM1017867, GSM1017868, GSM1017869, GSM1017870, GSM1017871, GSM1017872, GSM1017873, GSM1017874, GSM1017875, GSM1017876, GSM1017877, GSM1017878, GSM1017879, GSM1017880, GSM1017881, GSM1017882, GSM1017883, GSM1017884, GSM1017885, GSM1017886, GSM1017887, GSM1017888, GSM1017889, GSM1017890, GSM1017891, GSM1023946, GSM1023947, GSM1023948, GSM1023949, GSM1023950, GSM1023951, GSM1023952, GSM1023953, GSM1023954, GSM1023955, GSM1080762, GSM1080763, GSM1080764, GSM1080765, GSM1080766, GSM1130059, GSM1130060, GSM1133596, GSM1133597, GSM1133598, GSM1133599, GSM1141202, GSM1141203, GSM1141204, GSM1141205, GSM1150632, GSM1150633, GSM1150634, GSM1150635, GSM1150636, GSM1150637, GSM1208427, GSM1208428, GSM1208429, GSM1208430, GSM1208431, GSM1208432, GSM1208433, GSM1208434, GSM1208435, GSM1208436, GSM1208437, GSM1208438, GSM1208439, GSM1208440, GSM1208441, GSM1208442, GSM1208443, GSM1277102, GSM1277103, GSM1309500, GSM1309501, GSM1309502, GSM1309503, GSM1309504, GSM1309505, GSM1309506, GSM1309507, GSM1309508, GSM1318196, GSM1318197, GSM1318198, GSM1318199, GSM1374062, GSM1374063, GSM1374064, GSM1374065, GSM1374066, GSM1377072, GSM1377073, GSM1377140, GSM1377141, GSM1377142, GSM1377143, GSM1377144, GSM1377145, GSM1377146, GSM1377147, GSM1377148, GSM1377149, GSM1377150, GSM1377151, GSM1377152, GSM1377153, GSM1377154, GSM1377155, GSM1429702, GSM1429703, GSM1429704, GSM1429705, GSM1429706, GSM1429707, GSM1429708, GSM1429709, GSM1429710, GSM1429711, GSM1429712, GSM1429713, GSM1429714, GSM1429715, GSM1429716, GSM1429717, GSM1437431, GSM1437432, GSM1437433, GSM1437434, GSM1437435, GSM1437436, GSM1437437, GSM1437438, GSM1437439, GSM1437440, GSM1437441, GSM1437442, GSM1437443, GSM1437444, GSM1437445, GSM1437446, GSM1437447, GSM1437448, GSM1437449, GSM1437450, GSM1437451, GSM1437452, GSM1437453, GSM1513886, GSM1513887, GSM1513888, GSM1513889, GSM1513890, GSM1574710, GSM1574711, GSM1574712, GSM1574713, GSM1574714, GSM1574715, GSM1614509, GSM1614510, GSM1614511, GSM1614512, GSM1614513, GSM1614514, GSM1614515, GSM1614516, GSM1614517, GSM1614518, GSM1614519, GSM1614520, GSM1614521, GSM1614522, GSM1614523, GSM1614524, GSM1614525, GSM1614526, GSM1614527, GSM1614528, GSM1614529, GSM1614530, GSM1614531, GSM1614532, GSM1627527, GSM1627528, GSM1627529, GSM1627530, GSM1627531, GSM1849253, GSM1849254, GSM1849255, GSM1849256, GSM1849257, GSM1849258, GSM1849259, GSM1849260, GSM1849261, GSM1849262, GSM1849263, GSM1849264, GSM1849265, GSM1849266, GSM1849267, GSM1849268, GSM1849269, GSM1849270, GSM1849271, GSM1849272, GSM1849273, GSM1849274, GSM1849275, GSM1849276, GSM2175316, GSM2390103, GSM2390104, GSM2390105, GSM2390106, GSM2453311, GSM2453312, GSM2453313, GSM2453314, GSM2453315, GSM2453316, GSM2453317, GSM2453318, GSM2453319, GSM2453320, GSM2453321, GSM2453322, GSM2453323, GSM2453324, GSM2453325, GSM2453326, GSM2453327, GSM2453328, GSM3207769, GSM3207770, GSM3207771, GSM3207772, GSM3207773, GSM3207774, GSM3207775, GSM3207776, GSM3207777, GSM3207778, GSM3207779, GSM3207780, GSM3207781, GSM3207782, GSM3207783, GSM3207784, GSM3207785, GSM3207786...
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You can also download a list of all accessions here
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| Series (59)
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| GSE13790 |
Specific acetylase-deacetylase balance controls stress adaptation by modulating global histone H3K14 acetylation. |
| GSE14864 |
Establishing the program of origin firing during S phase in fission yeast |
| GSE16040 |
S. pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from S. cerevisiae |
| GSE16514 |
Genome-wide localization of Gcn5 under normal and stress conditions in S. cerevisiae and S. pombe |
| GSE16556 |
Role of Gcn5 in KCl stress adaptation in S. cerevisiae and S. pombe: transcriptional and genomic analyses |
| GSE17010 |
Differential pre-mRNA defects in fission yeast carrying a temperature degron allele of the SMN gene |
| GSE18440 |
Nuclear retention of fission yeast dicer is a prerequisite for RNAi-mediated heterochromatin assembly |
| GSE23758 |
Genome-wide mapping of histone H2A phosphorylation during S-phase in Schizosaccharomyces pombe (fission yeast) |
| GSE24360 |
DamID for Swi6, Rdp1 and Dcr1 in Schizosaccharomyces pombe |
| GSE28182 |
Mrc1 marks early-firing origins and coordinates timing and efficiency of initiation in fission yeast |
| GSE28879 |
Nucleosomal organization of replication origins and meiotic recombination hotspots in fission yeast |
| GSE30476 |
DamID of Ima1 and Man1 in Schizosaccharomyces pombe |
| GSE31119 |
Expression profiling of mmi1 delta cells, using tiling microarray in S. pombe |
| GSE31648 |
Histone H3 lysine9 acetylation, rather than lysine4 trimethylation, marks meiotic recombination hotspots and promotes recombination initiation in fission yeast |
| GSE31650 |
Multiple bypass pathways of Hsk1 kinase essential for initiation of DNA replication in fission yeast |
| GSE31846 |
Genome-wide binding site of Rec10 and Rec15 during meiosis |
| GSE32310 |
Transcriptome analysis of mediator Med20 mutant and dcr1 mutant in S.pombe |
| GSE34369 |
Rif1 is a global regulator of timing of replication origin firing in fission yeast |
| GSE35527 |
Mediator promotes CENP-A incorporation at fission yeast centromeres |
| GSE36113 |
RNA expression for dcr1D, rdp1D, ago1D and swi6D |
| GSE36167 |
DamID for Swi6, Rdp1, Dcr1, Ago1, Arb1, Cid14, Rrp6, Nup85 and Amo1 in Schizosaccharomyces pombe |
| GSE36214 |
RNA interference keeps Atf1-bound stress response genes in check at nuclear pores |
| GSE36956 |
DamID for Cid14 in wild-type and swi6∆ |
| GSE38005 |
Comparison of genome-wide gene expression in wild-type and swd2.2delta fission yeast cells |
| GSE41024 |
CHD1 remodelers space nucleosomes in vitro and link regular arrays to 5’ ends of genes in S. Pombe |
| GSE41403 |
Characterization and in vivo functional analysis of the Schizosaccharomyces pombe ICln gene |
| GSE41770 |
Clustered regulatory signals at nucleosome-depleted regions punctuate a constant nucleosomal landscape in Schizosaccharomyces pombe [Affymetrix] |
| GSE41773 |
Clustered regulatory signals at nucleosome-depleted regions punctuate a constant nucleosomal landscape in Schizosaccharomyces pombe |
| GSE44206 |
DNA topoisomerase III localizes to centromeres and affects centromeric CENP-A levels in fission yeast |
| GSE46427 |
Telomeric repeats facilitate CENP-A incorporation via telomere binding proteins |
| GSE46649 |
The Mi-2 homolog, Mit1, actively positions nucleosomes within heterochromatic domains to suppress transcription |
| GSE46919 |
Transcriptional response of Schizosaccharomyces pombe to 5-Fluorouracil (5FU) |
| GSE47464 |
Role of Fft3 in nuclear organization [DamID-chip, ChIP-chip] |
| GSE49874 |
Centromeric H2B monoubiquitination promotes noncoding transcription and chromatin integrity |
| GSE52858 |
Meiotic recombination cold spots in chromosomal cohesion sites [ChIP-chip] |
| GSE52863 |
Meiotic recombination cold spots in chromosomal cohesion sites |
| GSE54190 |
RNAi mediates post-transcriptional repression of gene expression in fission yeast Schizosaccharomyces pombe [Affymetrix] |
| GSE54195 |
RNAi mediates post-transcriptional repression of gene expression in fission yeast Schizosaccharomyces pombe |
| GSE57068 |
Role of Fun30 remodelers in retrotransposon regulation [ChIP-chip and expression analysis] |
| GSE57069 |
Role of Fun30 remodelers in retrotransposon regulation |
| GSE57207 |
An in vivo screen identifies compounds that disrupt heterochromatin integrity |
| GSE58013 |
Role of Fft3 in nuclear organization |
| GSE59169 |
RNA expression profiling for Paf1 complex mutant strains [mRNA] |
| GSE59171 |
RNA expression profiling for Paf1 complex mutant strains |
| GSE59461 |
A nucleosome turnover map reveals that the stability of histone H4 Lys20 methylation depend on histone recycling in transcribed chromatin [ChIP] |
| GSE61792 |
Fission yeast Cactin restricts telomere transcription and elongation by promoting Rap1 pre-mRNA splicing and protein stabilization |
| GSE64585 |
Uracil Repair - A Source of DNA Glycosylase Dependent Genome Instability |
| GSE66106 |
Factors that promote H3 chromatin integrity during transcription prevent promiscuous deposition of CENP-A(Cnp1) in fission yeast |
| GSE66866 |
A nucleosome turnover map reveals that the stability of histone H4 Lys20 methylation depend on histone recycling in transcribed chromatin |
| GSE71983 |
Differential regulation of telomere associated transcriptome homeostasis by Translin and Trax is linked to Argonaute-mediated chromosome stability control |
| GSE81776 |
The histone variant H2A.Z promotes initiation of meiotic recombination (ChIP) |
| GSE81777 |
The histone variant H2A.Z promotes initiation of meiotic recombination |
| GSE89825 |
Stepwise chromatin remodeling by two lincRNAs underlies cell fate in fission yeast |
| GSE93433 |
The histone acetyltransferase Mst2 prevents epigenetic silencing via specific acetylation of the ubiquitin ligase Brl1 [microarray data] |
| GSE93434 |
The histone acetyltransferase Mst2 prevents epigenetic silencing via specific acetylation of the ubiquitin ligase Brl1 |
| GSE116038 |
Leo1 is essential for dynamic regulation of heterochromatin and gene expression during cellular quiescence [ChIP microarray] |
| GSE124293 |
Maintenance of meiotic crossover against reduced DSB formation in fission yeast lacking histone H2A.Z |
| GSE125910 |
Abo1 is required for H3K9me2 to H3K9me3 transition in telomeric and centromeric heterochromatin [gene expression] |
| GSE125912 |
Abo1 is required for H3K9me2 to H3K9me3 transition in telomeric and centromeric heterochromatin |
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| Relations |
| Alternative to |
GPL9672 (Alternative CDF) |
| Alternative to |
GPL10187 (Alternative CDF) |
| Supplementary data files not provided |
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