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Series GSE32520 Query DataSets for GSE32520
Status Public on Oct 01, 2011
Title Transcriptional and metabolomic consequences of luxS inactivation reveal a metabolic rather than quorum sensing role for LuxS in Lactobacillus reuteri 100-23
Organism Limosilactobacillus reuteri subsp. rodentium
Experiment type Expression profiling by array
Summary Autoinducer-2 (AI-2)-mediated quorum sensing has been extensively studied in relation to the regulation of microbial behaviour. There are however two potential roles for the AI-2 synthase (LuxS). The first is in the production of AI-2 and the second is as an enzyme in the activated methyl cycle where it catalyses the conversion of S-ribosylhomocysteine to homocysteine. The by-product of the reaction catalysed by LuxS is (S)-4,5-dihydroxy-2,3-pentanedione (DPD), which spontaneously forms the furanones known collectively as AI-2. The mammalian gastrointestinal tract contains a complex collection of bacterial species so a method of interspecies communication might influence community structure and function. Lactobacillus reuteri 100-23 is an autochthonous inhabitant of the rodent forestomach where it adheres to the non-secretory epithelium of the forestomach forming a biofilm. Microarray comparisons of gene expression profiles of the L. reuteri 100-23 wild type and a luxS mutant under different culture conditions revealed altered transcription of genes encoding proteins involved in cysteine biosynthesis, the oxidative stress response and cell wall proteins. Metabolomic analysis revealed that the luxS mutation affected cellular levels of fermentation products, fatty acids and amino acids. Cell density-dependent changes (log phase versus stationary phase growth) in gene transcription were not detected. Overall, the results indicated that AI-2 was unlikely to be involved in gene regulation in L. reuteri 100-23 in a classical quorum-sensing type manner.
 
Overall design Analysis of the microarray data was obtained from two or more independent biological replicates.
 
Contributor(s) Wilson CM, O'Toole P, Boas SV, Aggio R, Tannock GW
Citation(s) 22287522
Submission date Sep 30, 2011
Last update date Mar 23, 2012
Contact name Charlotte Wilson
Organization name ORNL
Department Biosciences Bldg 1520
Lab 329
Street address 1 Bethel Valley Road
City Oak Ridge
State/province Tennessee
ZIP/Postal code 37831-6342
Country New Zealand
 
Platforms (1)
GPL10986 Agilent-020127 Lactobacillus reuteri 100-23 Agilent 4x44k format
Samples (8)
GSM805411 LuxS_vs._WT_Log_phase_rep1
GSM805412 LuxS_vs._WT_Log_phase_rep2
GSM805413 LuxS_vs._WT_Stationary_phase_rep1
Relations
BioProject PRJNA147845

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Supplementary file Size Download File type/resource
GSE32520_RAW.tar 83.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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