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| Status |
Public on Nov 02, 2012 |
| Title |
Open chromatin maps of genetically different yeast strains |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Open chromatin provides access to a wide spectrum of DNA binding proteins for DNA metabolism processes such as transcription, repair, recombination, and replication. In this regard, open chromatin profiling has been widely used to identify the location of regulatory regions, including promoters, enhancers, insulators, silencers, replication origins, and recombination hotspots. For a quantitative getic analysis of chromatin regulation, we generated open chromatin maps of 100 yeast samples including the parental strains (BY and RM, and two replicates for each) and their descendants by using the FAIRE-seq technique
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| Overall design |
Open chromatin in two parental strains and 94 segregants of their crossing
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| Contributor(s) |
Lee K, Kim K, Choi J |
| Citation(s) |
23408895, 26175661 |
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| Submission date |
Nov 03, 2011 |
| Last update date |
Jul 31, 2019 |
| Contact name |
kwoneel kim |
| E-mail(s) |
kwoneelkim@gmail.com
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| Organization name |
KAIST
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| Street address |
Gwahangno, Yuseong gu
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| City |
Daejeon, Seoul |
| ZIP/Postal code |
305-701 |
| Country |
South Korea |
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| Platforms (1) |
| GPL13821 |
Illumina HiSeq 2000 (Saccharomyces cerevisiae) |
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| Samples (96)
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| Relations |
| SRA |
SRP009190 |
| BioProject |
PRJNA148785 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE33466_RAW.tar |
1.8 Gb |
(http)(custom) |
TAR (of BED) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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