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Series GSE33475 Query DataSets for GSE33475
Status Public on Nov 04, 2014
Title The exon junction complex is restricted to a specific subset of splice junctions
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary We employ multi-step affinity purification followed by high-throughput sequencing to determine the location of EJC complexes assembled on a cellular transcriptome in Drosophila S2 cells, finding 6% of the intron-containing genes were not associated with EJCs, and within genes with multiple introns, only specific exon-exon junctions assembled an EJC.
 
Overall design RIP-Seq, 3 samples
 
Contributor(s) Haque N, Harms SA, Cook ME, Blanchette M
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 04, 2011
Last update date May 15, 2019
Contact name Marco Blanchette
E-mail(s) marcoblanchette@icloud.com
Phone 415-272-4837
Organization name Stowers Institute for Medical Research
Lab Marco Blanchette
Street address 1000 E. 50th St.
City Kansas City
State/province MO
ZIP/Postal code 64110
Country USA
 
Platforms (1)
GPL11203 Illumina Genome Analyzer IIx (Drosophila melanogaster)
Samples (3)
GSM828158 HF-4A3_Y14
GSM828159 HF-Btz_4A3
GSM828160 HF-Y14_4A3
Relations
SRA SRP009195
BioProject PRJNA148761

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33475_RAW.tar 5.2 Gb (http)(custom) TAR (of BAM, BED)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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