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Platform GPL11203

Query DataSets for GPL11203

Status

Public on Nov 12, 2010

Title

Illumina Genome Analyzer IIx (Drosophila melanogaster)

Technology type

high-throughput sequencing

Distribution

virtual

Organism

Drosophila melanogaster

Submission date

Nov 12, 2010

Last update date

Mar 04, 2014

Contact name

GEO

Country

USA

Samples (1561)

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GSM622678, GSM622679, GSM622680, GSM622681, GSM622682, GSM622683

Series (114)

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GSE23543	GRO-seq in Drosophila melanogaster S2 cells
GSE23544	Comparison of GRO-seq with Pol II (Rpb3) ChIP-seq in Drosophila melanogaster S2 cells
GSE25312	High-througput Bacteria one hybrid (B1H) selections for all Drosophila homeodomain proteins

GSE27269	Identifying targets of DSX with DamID-seq
GSE28180	The Genomic Binding Sites of an Endogenous Non-Coding RNA
GSE29972	Deep sequencing the circadian transcriptome of Drosophila brain
GSE30757	Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition
GSE30820	Chromatin maps of the Drosophila melanogaster TrxG protein Ash1 and FSH
GSE30997	[E-MTAB-652] CID island ChIP
GSE31194	Parallel high-throughput RNA-sequencing suggests little overlap of differential gene expression between knockout of TDP-43 and its over-expression in central nervous system in Drosophila
GSE31226	Heat-shock protein 90 globally targets paused promoters and regulates environment-induced gene expression
GSE32038	Differential Gene and Transcript Expression Analysis with TopHat and Cufflinks
GSE32120	The little elongation complex (LEC) regulates small nuclear RNA transcription
GSE32329	Whole genome expression analysis in the third-instar larval midgut of Drosophila melanogaster
GSE33475	The exon junction complex is restricted to a specific subset of splice junctions
GSE33546	Polycomb repressive complex 2-dependent and -independent functions of Jarid2 in transcriptional regulation in Drosophila [ChIP-Seq]
GSE33595	The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs
GSE33905	Identification of polyA sites in Drosophila melanogaster
GSE34281	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression (RNA-seq data)
GSE34283	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression (MNase-seq data)
GSE34301	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression (ChIP-seq data)
GSE34304	Poised RNA Polymerase II changes over developmental time and prepares genes for future expression
GSE34425	The methylome of Drosophila melanogaster
GSE34728	The tudor domain protein Kumo is required to assemble the nuage and to generate germline piRNAs in Drosophila
GSE35812	Radicicol treatment of Drosophila cells
GSE36039	Polycomb repressive complex 2-dependent and –independent functions of Jarid2 in transcriptional regulation in Drosophila
GSE36212	Promoter activity profiling throughout the Drosophila life cycle reveals role of transposons in regulatory innovation
GSE36213	Profiling of transcription start site expression in Drosophila and the human K562 cell line using RAMPAGE
GSE36310	Tissue specific Pol II Chip-Seq in the early fly embryo
GSE36404	Generation of chromatin maps for ASH1 and FSH applying ChIP-seq
GSE36450	The BET protein FSH functionally interacts with ASH1 to orchestrate global gene activity in Drosophila
GSE37811	mRNA-Seq of head tissue from Doa and fne mutants, Drosophila melanogaster.
GSE38435	New partners in regulation of gene expression: the Enhancer of Trithorax and Polycomb Corto interacts with methylated Ribosomal Protein L12 via its chromodomain.
GSE38998	RNA sequencing in fly heads to examine the effect of spermidine feeding on transcription in the ageing fly brain.
GSE39782	Tag-seq profiling in eye-antennal and wing imaginal discs of D. melanogaster, D. yakuba and D. virilis
GSE39784	Tag-seq in eye-antennal and wing imaginal discs of D.melanogaster, D.yakuba, and D.virilis; RNA-seq in wild-type and glass mutant D.melanogaster eye-antennal imaginal discs.
GSE40467	cis-Regulatory Requirements for Tissue-Specific Programs of the Circadian Clock
GSE40664	Identification of transcription factor binding sites from ChIP-seq data at high-resolution
GSE40739	Genome-wide quantitative enhancer activity maps identified by STARR-seq
GSE40748	A user-friendly chromatographic method to purify small regulatory RNAs
GSE41510	Transcriptome analysis of Drosophila CNS midline cells reveals diverse peptidergic properties and a role for castor in neuronal differentiation
GSE41686	A global change in RNA Polymerase II pausing during the Drosophila midblastula transition [MNase-seq]
GSE41700	A global change in RNA Polymerase II pausing during the Drosophila midblastula transition [ChIP-seq]
GSE41703	A global change in RNA Polymerase II pausing during the Drosophila midblastula transition
GSE41729	Transcriptional silencing of transposable elements by Piwi and its impact on chromatin and gene expression
GSE43734	Expression data from 0.15M and 0.7M-fed wild-type and ChREBP mutant, third instar Drosophila larval fat bodies (FBs)
GSE44612	Comparative Validation of the D. melanogaster Encyclopedia of DNA Elements Transcript Models
GSE44686	Genome-wide analysis of dFOXO binding sites in Drosophila
GSE45167	Ultra-deep profiling of alternatively spliced Drosophila Dscam isoforms by circularization-assisted multi-segment sequencing
GSE45290	Transposon defense by endo-siRNAs, piRNAs and somatic pilRNAs: Roles of Loqs-PD and R2D2
GSE45894	The genetic framework of the Drosophila piRNA pathway
GSE46614	Ibf1 and Ibf2 are DNA-binding proteins required for insulator function in Drosophila [ChIP-seq]
GSE47559	Ibf1 and Ibf2 are DNA-binding proteins required for insulator function in Drosophila
GSE49078	Stable pausing by RNA polymerase II provides an opportunity to target and integrate regulatory signals
GSE49102	dDsk2 stabilizes dHP1c binding at TSS [ChIP-Seq]
GSE49104	dDsk2 stabilizes dHP1c binding at TSS
GSE49480	Identifying targets of DSX with ChIP-seq, DamID-seq and DamID-chip and transcriptional response to DSX isoform switch
GSE49809	Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features
GSE50515	Male-specific Fruitless isoforms have different regulatory roles conferred by distinct zinc finger DNA binding domains
GSE51412	Transcriptome and proteome quantification of a tumor model provides novel insights into post-transcriptional gene regulation
GSE51598	CTCF/CP190 and ISWI dependent regulation of nucleosome occupancy [ChIP-seq]
GSE51599	CTCF/CP190 and ISWI dependent regulation of nucleosome occupancy [MNase-seq]
GSE51600	CTCF/CP190 and ISWI dependent regulation of nucleosome occupancy
GSE52472	Non-canonical TSSs of TEs alter gene structure and expression in Drosophila melanogaster
GSE52943	Genome-wide binding of the homeodomain transcription factor Sine oculis (So) in the Drosophila eye imaginal disc
GSE53020	Domain ChIRP reveals the modularity of long noncoding RNA architecture, function, and target genes
GSE54067	RNA-seq: technical variability and sampling (female)
GSE54069	RNA-seq: technical variability and sampling
GSE54600	Global transcriptional Analysis of Yap/Yki Orthologs in Drosophila melanogaster by RNA Seq
GSE54603	Functional Evolution of the Yap/Yorkie Proto-oncogene and Elucidation of its Core Transcriptional Program
GSE56665	mRNA profile of dG9a-depleted early embryo in Drosophila melanogaster
GSE57029	Profiling and comparison of miRNA populations in male and female tissues from Drosophila melanogaster at various stages
GSE57876	Enhancer-core promoter specificity separates developmental and housekeeping regulation
GSE58937	The Drosophila Tis11 protein and its effects on mRNA expression in flies
GSE60428	Cooperativity, specificity and evolutionary stability of Polycomb targeting in Drosophila
GSE60504	Drosophila melanogaster midgut transcriptome analysis after an oral infection by the entomopathogen bacteria Serratia marcescens
GSE61361	Transcriptome profiling of Drosophila intestinal cells
GSE65441	Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation
GSE66284	CAGE-Seq of gonads and carcasses from D. melanogaster and D. pseudoobscura
GSE67400	The Wright Stuff: Reimagining Path Analysis Reveals Novel Components of the Sex Determination Hierarchy in Drosophila Melanogaster
GSE67805	Genome-wide mapping of Collier in vivo binding sites highlights its hierarchical position in different transcription regulatory networks
GSE68983	Genome-wide analysis of enhancers in Drosophila DV patterning
GSE76214	Effect of high-sugar feeding on wandering third instar larval fat body gene expression in Drosophila melanogaster
GSE76912	Genome wide distribution of gammaH2AvD in Wild Type and RNAi dH1 Drosophila melanogaster S2 cells
GSE83871	Characterization of active piRNAs and an piRNA machinery in WRR-1 cells deficient for the Hippo pathway (deficient for the warts tumor suppressor) and expressing activated RasV12 (small RNA)
GSE83877	Characterization of active piRNAs and piRNA machinery in WRR-1 cells deficient for the Hippo pathway (deficient for the warts tumor suppressor) and expressing activated RasV12
GSE85191	Widespread transcriptional pausing and elongation control at enhancers
GSE85768	Transcripts enriched in microsome fraction in ribosome-independent manner
GSE86243	Genome wide analyses of Su(Hw)M393 binding in the Drosophila ovary
GSE89459	Genome wide binding of trr (ChIP-seq) and expression analysis (RNA-seq) of trr- and G9a mutant fly heads
GSE90724	Germline Dependent Gene Expression Changes in the Adult Head of Drosophila melanogaster Females
GSE93100	Mrg15 allosterically activates Ash1’s H3K36 methyltransferase activity and facilitates Ash1’s trithorax group protein function in Drosophila
GSE94394	Identification of endogenous changes in the transcriptome of young versus old Drosophila intestinal stem cells using Next Generation RNA Sequencing
GSE95800	Effect of Seven-up RNAi on wandering third instar larval fat body gene expression in Drosophila melanogaster
GSE96763	Effect of increased insulin signaling on third instar larval fat body gene expression in Drosophila melanogaster
GSE96959	Genomic distribution of dBigH1 in whole testes [ChIP-Seq]
GSE97447	Effect of reducing insulin signaling on third instar larval fat body gene expression in Drosophila melanogaster
GSE98223	Genomic distribution of H3T3ph in Drosophila melanogaster S2 cells
GSE103234	Microprocessor recruitment to elongating RNA Polymerase II is required for differential expression of microRNAs
GSE103291	Genomic distribution of dBigH1 in early embryos [ChIP-Seq]
GSE103292	Genomic distribution of dBigH1 in whole testes and early embryos
GSE104592	The tumor suppressor Brat controls neuronal lineages by inhibiting the transcription factors Deadpan and Zelda
GSE104839	Capicua controls Toll/IL-1 signaling targets independently of RTK regulation
GSE110432	Effect of EcR RNAi on wandering third instar larval fat body gene expression in Drosophila melanogaster
GSE111728	Effect of transgenic RNAi on wandering third instar larval fat body gene expression in Drosophila melanogaster
GSE117217	Remapping the SRA: Drosophila melanogaster RNA-Seq data from the Sequence Read Archive
GSE121059	Effects of high fructose and high glucose on third instar larval fat body gene expression in Drosophila melanogaster
GSE155874	Modulation of Aub–Tdrd interactions elucidates piRNA amplification and germ plasm formation
GSE172753	DNase-seq from S2 (ENCSR834VXA)
GSE178332	RNAseq from cuticles of tumor free (w1118) and tumor bearing Drosophila larvae (MARCM RasV12, scrib1) tumour-bearing Drosophila larvae
GSE256642	Control ChIP-seq from whole organism (ENCSR195DZI)
GSE257632	Control ChIP-seq from whole organism (ENCSR851BDY)
GSE257952	TF ChIP-seq from whole organism (ENCSR593IEE)
GSE259102	TF ChIP-seq from whole organism (ENCSR511YXX)

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