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Series GSE33642 Query DataSets for GSE33642
Status Public on Mar 12, 2012
Title Genome-wide profiling of small RNAs in Arabidopsis seedlings under salt and cold stresses
Organism Arabidopsis thaliana
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary To identify novel miRNA and NAT-siRNAs that are associated with salt and cold stresses in Arabidopsis, we generated small RNA sequences from Arabidopsis plants under salt and cold stress treatments.
 
Overall design Sequencing of small RNAs in Arabidopsis under salt, and cold stress conditions.
 
Contributor(s) Barrera-Figueroa BE, Chinnusamy V, Kan Y, Zhang W, Liu R, Jin H, Zhu J
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 12, 2011
Last update date May 15, 2019
Contact name Renyi Liu
E-mail(s) rliu.bicomp@gmail.com
Phone 02157078228
Organization name Shanghai Center for Plant Stress Biology
Department Bioinformatics
Street address 3888 Chenhua Road
City Shanghai
State/province Shanghai
ZIP/Postal code 201602
Country China
 
Platforms (1)
GPL9062 Illumina Genome Analyzer (Arabidopsis thaliana)
Samples (3)
GSM832032 Arabidopsis_salt_pdep
GSM832033 Arabidopsis_salt_pind
GSM832046 Arabidopsis_cold_stress
Relations
SRA SRP009411
BioProject PRJNA148671

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33642_RAW.tar 62.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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