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Series GSE34441 Query DataSets for GSE34441
Status Public on Jan 12, 2012
Title An antibiotic that inhibits a late step in wall teichoic acid biosynthesis induces the cell wall stress stimulon in Staphylococcus aureus
Organism Staphylococcus aureus
Experiment type Expression profiling by array
Summary Wall teichoic acids (WTAs) are phosphate-rich, sugar-based polymers attached to the cell walls of most Gram-positive bacteria. In Staphylococcus aureus, these anionic polymers regulate cell division, protect cells from osmotic stress, mediate host colonization, and mask enzymatically susceptible peptidoglycan bonds. Although WTAs are not required for survival in vitro, blocking the pathway at a late stage of synthesis is lethal. We recently discovered a novel antibiotic, targocil, that inhibits a late acting step in the WTA pathway. Its target is TarG, the transmembrane component of the ABC transporter (TarGH) that exports WTAs to the cell surface. Here we examine the effects of targocil on S. aureus using transmission electron microscopy (TEM) and gene expression profiling. We report that targocil treatment leads to multicellular clusters containing swollen cells displaying evidence of osmotic stress, strongly induces the cell wall stress stimulon, and reduces the expression of key virulence genes, including dltABCD and capsule genes. We conclude that WTA inhibitors that act at a late stage of the biosynthetic pathway may be useful as antibiotics, and we present evidence that they could be particularly useful in combination with beta-lactams.
 
Overall design Growth conditions for microarray analysis-For transcriptional profiling, an overnight S. aureus SH1000 culture was diluted (2% (v/v) into 20 mL TSB medium in a 50 mL Erlenmeyer flask and grown at 37 °C with shaking at 200 rpm. For the targocil treatment experiments, S. aureus was grown to an OD600 ~0.4 and challenged with 8x MIC of targocil dissolved in DMSO) for 30 min. Simultaneously, an equal amount of DMSO (final concentration 2% (v/v)) was added to the control culture, which was incubated along with the treated cultures. After 30 min, 5 mL aliquots were collected from control and treated cultures and used for toatl RNA preparation.
 
Contributor(s) Campbell J, Singh AK, Swoboda JG, Gilmore MS, Wilkinson BJ, Walker S
Citation(s) 22290958
Submission date Dec 14, 2011
Last update date May 02, 2012
Contact name Arunachalam Muthaiyan, Brian Wilkinson
E-mail(s) amuthai@gmail.com, bjwilkin@ilstu.edu
Phone 309-438-7244
URL http://www.bio.ilstu.edu/Wilkinson/
Organization name Illinois State University
Department Biological Sciences
Lab Microbiology
Street address Julian Hall
City Normal
State/province IL
ZIP/Postal code 61790
Country USA
 
Platforms (1)
GPL3866 TIGR Staphylococcus aureus version2 array
Samples (6)
GSM861273 SH1000-targocil-30 min_rep1 (slide 14)
GSM861274 SH1000-targocil-30 min_rep1 (slide 15)
GSM861275 SH1000-targocil-30 min_rep2 (slide 20)
Relations
BioProject PRJNA149619

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34441_RAW.tar 6.3 Mb (http)(custom) TAR (of TXT)
GSE34441_Replicate1_slide1415_final_SAM.txt.gz 25.3 Kb (ftp)(http) TXT
GSE34441_Replicate2_slide2022_final_SAM.txt.gz 16.8 Kb (ftp)(http) TXT
GSE34441_Replicate3_slide504556_final_SAM.txt.gz 27.6 Kb (ftp)(http) TXT
Processed data provided as supplementary file
Processed data are available on Series record

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