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Platform GPL3866 Query DataSets for GPL3866
Status Public on Nov 03, 2006
Title TIGR Staphylococcus aureus version2 array
Technology type spotted DNA/cDNA
Distribution commercial
Organism Staphylococcus aureus
Manufacturer The Institute for Genomic Research
Manufacture protocol Microarrays were constructed by The Institue for Genomic Research, Rockville, MD. They are amplicon based arrays containing all ORF's from Staphylococcus aureus COL (genbank ID CP000046), and selected ORF's from Staphylococcus aureus MW2 (genbank ID BA000033), N315 (Genbank ID BA000018) and Mu50 (Genbank ID BA000017). All genes are spotted in triplicate, including control spots (40 amplicons and 500 70-mers from A. thaliana).
Coating quartz
 
Description Microarrays were constructed by The Institue for Genomic Research, Rockville, MD. They are amplicon based arrays containing all ORF's from Staphylococcus aureus COL (genbank ID CP000046), and selected ORF's from Staphylococcus aureus MW2 (genbank ID BA000033), N315 (Genbank ID BA000018) and Mu50 (Genbank ID BA000017). All genes are spotted in triplicate, including control spots (40 amplicons and 500 70-mers from A. thaliana).
 
Contributor(s) Howden BP, Davies JK
Submission date Jun 10, 2006
Last update date Nov 03, 2006
Contact name Benjamin Peter Howden
E-mail(s) benjamin.howden@austin.org.au
Phone +61 3 9496 6676
Organization name Austin Health
Department Infectious Diseases
Street address Studley Rd
City Heidelberg
State/province Victoria
ZIP/Postal code 3084
Country Australia
 
Samples (11) GSM113849, GSM113850, GSM113851, GSM113852, GSM113853, GSM861273 
Series (2)
GSE5047 Genomic comparison of vancomycin susceptible and vancomycin intermediate Staphylococcus aureus pairs
GSE34441 An antibiotic that inhibits a late step in wall teichoic acid biosynthesis induces the cell wall stress stimulon in Staphylococcus aureus

Data table header descriptions
ID The Institute for Genomic Research ID
ORF GenBank ORF ID
STRAIN
NAME
SPOT_ID

Data table
ID ORF STRAIN NAME SPOT_ID
SA0001 SACOL0001 COL chromosomal replication initiator protein DnaA
SA0002 SACOL0002 COL DNA polymerase III, beta subunit
SA0003 SACOL0003 COL conserved hypothetical protein
SA0004 SACOL0004 COL recF protein
SA0005 SACOL0005 COL DNA gyrase, B subunit
SA0006 SACOL0006 COL DNA gyrase, A subunit
SA0007 SACOL0007 COL YjeF-related protein
SA0008 SACOL0008 COL histidine ammonia-lyase
SA0009 SACOL0009 COL seryl-tRNA synthetase
SA0010 SACOL0010 COL AzlC family protein
SA0011 SACOL0011 COL conserved hypothetical protein
SA0012 SACOL0012 COL homoserine O-acetyltransferase, putative
SA0013 SACOL0013 COL conserved hypothetical protein
SA0014 SACOL0014 COL DHH subfamily 1 protein
SA0015 SACOL0015 COL ribosomal protein L9
SA0016 SACOL0016 COL replicative DNA helicase
SA0018 SACOL0018 COL adenylosuccinate synthetase
SA0019 SACOL0019 COL DNA-binding response regulator YycF
SA0020 SACOL0020 COL sensory box histidine kinase YycG
SA0021 SACOL0021 COL yycH protein

Total number of rows: 3193

Table truncated, full table size 166 Kbytes.




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Supplementary data files not provided
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