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Series GSE34561 Query DataSets for GSE34561
Status Public on Dec 20, 2011
Title Enterococcus faecalis OG1RF vs. Δrel mutants under control or mupirocin-treated conditions
Platform organism Enterococcus faecalis
Sample organism Enterococcus faecalis OG1RF
Experiment type Expression profiling by array
Summary Transcriptional profiling to define the stringent response regulon and significance of basal (p)ppGpp levels in E. faecalis OG1RF.
 
Overall design RNA was extracted from four replicate samples of each strain of interest and labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-labeled reference RNA, extracted from E. faecalis OG1RF cells grown to mid-log.
 
Contributor(s) Gaca AO, Kajfasz JK, Abranches J, Lemos J
Citation(s) 22653948, 24065631
Submission date Dec 19, 2011
Last update date Oct 18, 2013
Contact name Jessica K Kajfasz
E-mail(s) jkajfasz@dental.ufl.edu
Organization name University of Florida
Department Oral Biology
Lab Lemos-Abranches
Street address 1395 Center Drive
City Gainesville
State/province FL
ZIP/Postal code 32610
Country USA
 
Platforms (1)
GPL15039 JCVI PFGRC Enterococcus faecalis 14K v1 array (condensed)
Samples (48)
GSM851043 Control-grown E. faecalis OG1RF wild type, replicate 1
GSM851044 Control-grown E. faecalis OG1RF wild type, replicate 2
GSM851045 Control-grown E. faecalis OG1RF wild type, replicate 3
Relations
BioProject PRJNA151035

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE34561_RAW.tar 5.6 Mb (http)(custom) TAR (of MEV)
Processed data included within Sample table

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