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| Status |
Public on Dec 18, 2012 |
| Title |
Expression analysis of HFF cells in G1 phase [MAT] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by genome tiling array
|
| Summary |
Whole transcriptome expression analysis of HFF cells on Affymetrix Human Tiling 1.0 array set. Cells were synchronised by serum starvation and transcriptome-wide expression in G1 phase. Expression data were processed with MAT (Johnson et al., "Model-based analysis of tiling-arrays for ChIP-chip." Proc Natl Acad Sci USA, 103:12457-62, 2006.).
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| |
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| Overall design |
We analyzed one Affymetrix Human Tiling 1.0R set
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| |
|
| Contributor(s) |
Reiche K, Böhlig L, Otto C, Kretzschmar A, Horn F, Hackermüller J, Engeland K |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Feb 29, 2012 |
| Last update date |
Feb 25, 2013 |
| Contact name |
Kristin Reiche |
| E-mail(s) |
kristin.reiche@izi.fraunhofer.de
|
| Organization name |
Fraunhofer Institute for Cell Therapy and Immunology
|
| Department |
Diagnostics
|
| Street address |
Perlickstr. 1
|
| City |
Leipzig |
| ZIP/Postal code |
04103 |
| Country |
Germany |
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| Platforms (14)
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| GPL6156 |
[Hs35b_M01R] Affymetrix Human Tiling 1.0R Set, Array 1 |
| GPL6157 |
[Hs35b_M02R] Affymetrix Human Tiling 1.0R Set, Array 2 |
| GPL6158 |
[Hs35b_M03R] Affymetrix Human Tiling 1.0R Set, Array 3 |
| GPL6159 |
[Hs35b_M04R] Affymetrix Human Tiling 1.0R Set, Array 4 |
| GPL6160 |
[Hs35b_M05R] Affymetrix Human Tiling 1.0R Set, Array 5 |
| GPL6161 |
[Hs35b_M06R] Affymetrix Human Tiling 1.0R Set, Array 6 |
| GPL6162 |
[Hs35b_M07R] Affymetrix Human Tiling 1.0R Set, Array 7 |
| GPL6163 |
[Hs35b_M08R] Affymetrix Human Tiling 1.0R Set, Array 8 |
| GPL6164 |
[Hs35b_M09R] Affymetrix Human Tiling 1.0R Set, Array 9 |
| GPL6165 |
[Hs35b_M10R] Affymetrix Human Tiling 1.0R Set, Array 10 |
| GPL6166 |
[Hs35b_M11R] Affymetrix Human Tiling 1.0R Set, Array 11 |
| GPL6167 |
[Hs35b_M12R] Affymetrix Human Tiling 1.0R Set, Array 12 |
| GPL6168 |
[Hs35b_M13R] Affymetrix Human Tiling 1.0R Set, Array 13 |
| GPL6169 |
[Hs35b_M14R] Affymetrix Human Tiling 1.0R Set, Array 14 |
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| Samples (14)
|
| GSM881900 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipA |
| GSM881901 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipB |
| GSM881902 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipC |
| GSM881903 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipD |
| GSM881904 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipE |
| GSM881905 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipF |
| GSM881906 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipG |
| GSM881907 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipH |
| GSM881908 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipI |
| GSM881909 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipJ |
| GSM881910 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipK |
| GSM881911 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipL |
| GSM881912 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipM |
| GSM881913 |
Whole transcriptome differential expression analysis of HFF cells using MAT_G1_chipN |
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| This SubSeries is part of SuperSeries: |
| GSE36187 |
Differential expression analysis of HFF cells in G0 phase compared to cells in G1 using MAT |
|
| Relations |
| BioProject |
PRJNA155763 |
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