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| Status |
Public on Oct 21, 2013 |
| Title |
Expression evolution in gene groups: Inferring non-neutral regulatory change in pathways from transcriptional profiling data |
| Organisms |
Saccharomyces bayanus; Saccharomyces cerevisiae; Saccharomyces paradoxus; Saccharomyces mikatae; Saccharomyces cerevisiae x Saccharomyces paradoxus; Saccharomyces cerevisiae x Saccharomyces bayanus; Saccharomyces cerevisiae x Saccharomyces mikatae |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We profiled the transcriptomes of four Saccharomyces species, as well as pairwise hybrids between three of the species with S. cerevisiae
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| Overall design |
For pairwise comparisons between Saccharomyces cerevisiae and each of S. paradoxus, S. mikatae, and S. bayanus, we performed 3'-end RNA-seq on RNA from each parent species and each interspecific hybrid.
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| |
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| Contributor(s) |
Mostovoy Y, Hsu TY, Brem RB |
| Citation(s) |
24130471 |
| |
| Submission date |
Jun 22, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Yulia Mostovoy |
| Organization name |
University of California, San Francisco
|
| Lab |
Kwok lab
|
| Street address |
555 Mission Bay Blvd South
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
| |
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| Platforms (7)
|
| GPL13272 |
Illumina Genome Analyzer IIx (Saccharomyces cerevisiae) |
| GPL15725 |
Illumina Genome Analyzer IIx (Saccharomyces paradoxus) |
| GPL15726 |
Illumina Genome Analyzer IIx (Saccharomyces mikatae) |
| GPL15727 |
Illumina Genome Analyzer IIx (Saccharomyces bayanus) |
| GPL17066 |
Illumina Genome Analyzer IIx (Saccharomyces cerevisiae x Saccharomyces paradoxus) |
| GPL17067 |
Illumina Genome Analyzer IIx (Saccharomyces cerevisiae x Saccharomyces mikatae) |
| GPL17068 |
Illumina Genome Analyzer IIx (Saccharomyces cerevisiae x Saccharomyces bayanus) |
|
| Samples (18)
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|
| Relations |
| BioProject |
PRJNA169153 |
| SRA |
SRP013862 |
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