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Series GSE39000 Query DataSets for GSE39000
Status Public on Nov 26, 2012
Title Expression profiles of microRNAs from lactating and non-lactating bovine mammary glands and identification of miRNA related to lactation.
Organism Bos taurus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary miRNAs have been implicated in the regulation of milk protein synthesis and development of mammary gland. However, the function of miRNAs in regulating lactation is unclear. Therefore, the elucidation of miRNA expression profiles in MG provides a crucial entry into the understanding of the mechanisms of lactation initiation. Our present work is to examine miRNA expression profiles in bovine mammary gland, and to evaluate miRNAs function through the identification of differentially expressed miRNA between lactation and non-lactation mammary gland. Identification of novel miRNAs highlights the important function of low abundance and less conserved miRNAs. An interaction network of known miRNAs and their target genes around the lactation function was constructed to postulate the functional roles of miRNAs in mammary gland. This integrated analysis provides important information that will inspire further experimental investigations into the field of miRNAs and their targets during lactation.
 
Overall design Examination of 2 different miRNA expression profilings in bovine mammary gland
 
Contributor(s) Li Z, Liu H, Jin X, Lo L, Liu J
Citation(s) 23270386
Submission date Jun 28, 2012
Last update date May 15, 2019
Contact name Zhen Li
E-mail(s) likeyi-01@163.com
Organization name College of Animal Science, Zhejiang University
Street address 866 Yuhang Tang Road
City Hangzhou
ZIP/Postal code 310058
Country China
 
Platforms (1)
GPL15750 Illumina Genome Analyzer IIx (Bos taurus)
Samples (2)
GSM953490 lactation-miRNA
GSM953491 non-lactation-miRNA
Relations
BioProject PRJNA169633
SRA SRP014004

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39000_Profile_of_bovine_novel_miRNAs.txt.gz 30.9 Kb (ftp)(http) TXT
GSE39000_Profile_of_conserved_miRNAs_originating_from_pre-miRNAs.txt.gz 7.6 Kb (ftp)(http) TXT
GSE39000_Profile_of_the_known_bovine_miRNA.txt.gz 11.1 Kb (ftp)(http) TXT
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Processed data are available on Series record
Raw data are available in SRA

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