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Series GSE39446 Query DataSets for GSE39446
Status Public on Jul 18, 2012
Title Comprehensive profiling of DNA methylation in colorectal cancer reveals subgroups with distinct clinicopathological and molecular features
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary The Illumina GoldenGateĀ® methylation array was used to evaluate DNA methylation at 1,505 CpG sites in 807 cancer-related genes in 91 consecutive CRC samples and 28 matched normal colonic mucosa.
 
Overall design Bisulphite converted DNA from the 119 samples (91 CRC, 28 matched normals) were hybridised to the Illumina GoldenGateĀ® methylation array.
 
Contributor(s) Ang PW, Loh M, Liem N, Lim PL, Grieu F, Vaithilingam A, Platell C, Yong WP, Iacopetta B, Soong R
Citation(s) 20492682
Submission date Jul 17, 2012
Last update date Jul 18, 2012
Contact name Marie Loh
E-mail(s) marie_lohcs@yahoo.com
Organization name National University of Singapore
Street address 14 Medical Drive
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platforms (1)
GPL9183 Illumina GoldenGate Methylation Cancer Panel I
Samples (119)
GSM969260 genomic DNA from tumor tissue sample id 13
GSM969261 genomic DNA from tumor tissue sample id 14
GSM969262 genomic DNA from tumor tissue sample id 16
Relations
BioProject PRJNA170883

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided
Processed data included within Sample table

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