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Platform GPL9183 Query DataSets for GPL9183
Status Public on Sep 11, 2009
Title Illumina GoldenGate Methylation Cancer Panel I
Technology type oligonucleotide beads
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Illumina
Manufacture protocol Bibikova et al. High-throughput DNA methylation profiling using universal bead arrays. Genome research 2006;16:383-93.
 
 
Submission date Sep 11, 2009
Last update date Mar 11, 2011
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (5843) GSM415953, GSM415954, GSM415955, GSM415956, GSM415957, GSM415958 
Series (40)
GSE16559 Lung adenocarcinoma and mesothelioma DNA methylation
GSE18081 CpG site methylation of HCV-cirrhotic, HCV-HCC, and normal liver tissues
GSE19033 Changes in the Pattern of DNA Methylation Associate with Twin Discordance in SLE

Data table header descriptions
ID Illumina probe name (GENE_position_strand)
Gid
GB_ACC GenBank or RefSeq accession number
SPOT_ID
Symbol HUGO gene symbol
Gene_ID
Chromosome chromosome
REFSEQ Genome build version
CpG_Coordinate position of interrogated CpG
Dist_to_TSS distance to transcription start site
CpG_island Is target CpG in a CpG island (as defined by Takai and Jones, PNAS)
SEQUENCE probe sequence
Synonym
Annotation
Product
cg_no

Data table
ID Gid GB_ACC SPOT_ID Symbol Gene_ID Chromosome REFSEQ CpG_Coordinate Dist_to_TSS CpG_island SEQUENCE Synonym Annotation Product cg_no
AATK_E63_R 89041906 XM_927215.1 AATK 9625 17 36.1 76709831 63 N GGGCAGAAGCCAGCTTGATGGCAGACACCT[CG]CCACCAGTAGCAGGCGTGGGAGAGTC . PREDICTED: Homo sapiens apoptosis-associated tyrosine kinase (AATK), mRNA. apoptosis-associated tyrosine kinase cg05292376
AATK_P519_R 89041906 XM_927215.1 AATK 9625 17 36.1 76710413 -519 Y GGGGACGTGCCCAGTGGGTCCT[CG]AAGAAGGCAGGACAGAAGGCGG . PREDICTED: Homo sapiens apoptosis-associated tyrosine kinase (AATK), mRNA. apoptosis-associated tyrosine kinase cg17279079
AATK_P709_R 89041906 XM_927215.1 AATK 9625 17 36.1 76710603 -709 Y ACGGGTGGCCCGTGGCCCAGCAG[CG]GCTCCATGGCCAGCGAGGCGG . PREDICTED: Homo sapiens apoptosis-associated tyrosine kinase (AATK), mRNA. apoptosis-associated tyrosine kinase cg02979355
ABCA1_E120_R 21536375 NM_005502.2 ABCA1 19 9 36.1 106730137 120 Y ACCGGGGAAAAAACAAGGAGCAAAG[CG]CCCTGAGAACCGGCTCTGTTG TGD, ABC1, CERP, ABC-1, HDLDT1 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. ATP-binding cassette, sub-family A member 1 cg24415731
ABCA1_P45_F 21536375 NM_005502.2 ABCA1 19 9 36.1 106730302 -45 Y AGTTCCTTTTATAGATTCGGCTGCAC[CG]AGCGCAGAGGTTACTATCGGTCAAAGCCT TGD, ABC1, CERP, ABC-1, HDLDT1 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. ATP-binding cassette, sub-family A member 1 cg26272837
ABCB4_E429_F 9961251 NM_018850.1 ABCB4 5244 7 36.1 86947255 429 N TTCCTTGGACTTCTCAGTCTATTCT[CG]CCACTTCTGTCATGTCAGTCAGTCACAC MDR3, PGY3, ABC21, MDR2/3, PFIC-3 Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 4 (ABCB4), transcript variant C, mRNA. ATP-binding cassette, subfamily B, member 4 isoform C cg05279864
ABCB4_P51_F 9961251 NM_018850.1 ABCB4 5244 7 36.1 86947735 -51 N TCTGTCCTTTCCTCCTCTTC[CG]CCTTTGTCCATTGTCAAAAGCATGGCCTGG MDR3, PGY3, ABC21, MDR2/3, PFIC-3 Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 4 (ABCB4), transcript variant C, mRNA. ATP-binding cassette, subfamily B, member 4 isoform C cg18655915
ABCB4_P892_F 9961251 NM_018850.1 ABCB4 5244 7 36.1 86948576 -892 N GAATTAGGCTTCCAGCTCTGGCCA[CG]TGACTTCAGCTTCTCATTCTGTATTCCTAT MDR3, PGY3, ABC21, MDR2/3, PFIC-3 Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 4 (ABCB4), transcript variant C, mRNA. ATP-binding cassette, subfamily B, member 4 isoform C cg02810586
ABCC2_E16_R 4557480 NM_000392.1 ABCC2 1244 10 36.1 101532577 16 N AATAGAAGAGTCTTCGTTCCAGA[CG]CAGTCCAGGAATCATGCTGGAGAAGTTCT DJS, MRP2, cMRP, ABC30, CMOAT, KIAA1010 Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 2 (ABCC2), mRNA. ATP-binding cassette, sub-family C (CFTR/MRP), member 2 cg14947634
ABCC2_P88_F 4557480 NM_000392.1 ABCC2 1244 10 36.1 101532473 -88 N GTTGGGATGAAAGGTCATCCTTTA[CG]GAGAACATCAGAATGGTAGATAATTCC DJS, MRP2, cMRP, ABC30, CMOAT, KIAA1010 Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 2 (ABCC2), mRNA. ATP-binding cassette, sub-family C (CFTR/MRP), member 2 cg08067239
ABCC5_P444_F 66529004 NM_005688.2 ABCC5 10057 3 36.1 185218865 -444 Y GCTCATGGTTCGACCCTGCAGTCTG[CG]CAGATACCGCCTTTCTCACTTTAACAC MRP5, SMRP, ABC33, MOATC, MOAT-C, pABC11, EST277145 Homo sapiens ATP-binding cassette, sub-family C (CFTR/MRP), member 5 (ABCC5), transcript variant 1, mRNA. ATP-binding cassette, sub-family C, member 5 isoform 1 cg16378421
ABCG2_P178_R 62526032 NM_004827.2 ABCG2 9429 4 36.1 89299213 -178 Y CCGGCTGAAAGCGCACACGTGTCCTGC[CG]CGCTGAGCCGCCAGCAGGACTGG MRX, MXR, ABCP, BCRP, BMDP, MXR1, ABC15, BCRP1, CDw338, EST157481, MGC102821 Homo sapiens ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. ATP-binding cassette, sub-family G, member 2 cg08748699
ABCG2_P310_R 62526032 NM_004827.2 ABCG2 9429 4 36.1 89299345 -310 Y CGAACGGAATGAACCAGAGTGATTAACTA[CG]AGAATCACCAGGCGCTCATTGGGC MRX, MXR, ABCP, BCRP, BMDP, MXR1, ABC15, BCRP1, CDw338, EST157481, MGC102821 Homo sapiens ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. ATP-binding cassette, sub-family G, member 2 cg11000292
ABL1_P53_F 62362413 NM_005157.3 ABL1 25 9 36.1 132579036 -53 Y TCCGGAGAGCAAAGCAGAGAAGCGAGAG[CG]GCCACTAGTTCGGCAGGAAATTTG ABL, JTK7, p150, c-ABL, v-abl Homo sapiens v-abl Abelson murine leukemia viral oncogene homolog 1 (ABL1), transcript variant a, mRNA. v-abl Abelson murine leukemia viral oncogene homolog 1 isoform a cg25211462
ABL2_P459_R 6382061 NM_007314.1 ABL2 27 1 36.1 177465818 -459 Y GAGTGAGTCGAGGGCTCAGTGCCACCG[CG]TGCGCAGCTCAGGTGCAGGCACAGGT ARG, ABLL Homo sapiens v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene) (ABL2), transcript variant b, mRNA. v-abl Abelson murine leukemia viral oncogene homolog 2 isoform b cg00467594
ABO_E110_F 58331215 NM_020469.2 ABO 28 9 36.1 135140341 110 Y CCGGCTGTCGGGTGCACCC[CG]CATTCCCTGCGGTAGCGGCTCCCTC GTB, NAGAT, A3GALNT, A3GALT1 Homo sapiens ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) (ABO), mRNA. ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) cg01511667
ABO_P312_F 58331215 NM_020469.2 ABO 28 9 36.1 135140763 -312 Y CTTGACACCCTGTCTCCCGGG[CG]GGGGCGACCCCCTGACATCCTGCT GTB, NAGAT, A3GALNT, A3GALT1 Homo sapiens ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) (ABO), mRNA. ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) cg27345669
ACTG2_E98_R 63054873 NM_001615.3 ACTG2 72 2 36.1 73973699 98 N CCTCTCATACCCTCGGTAAGTACTGTA[CG]GCTTTTGCCACCTCTTCCTTTCC ACT, ACTE, ACTA3, ACTL3, ACTSG Homo sapiens actin, gamma 2, smooth muscle, enteric (ACTG2), mRNA. actin, gamma 2 propeptide cg04793455
ACTG2_P346_F 63054873 NM_001615.3 ACTG2 72 2 36.1 73973255 -346 N GGGCGTCCCAGGCAGACCCAGGGGC[CG]CATGCAGCAGGGCCTGAGGAGG ACT, ACTE, ACTA3, ACTL3, ACTSG Homo sapiens actin, gamma 2, smooth muscle, enteric (ACTG2), mRNA. actin, gamma 2 propeptide cg15966469
ACTG2_P455_R 63054873 NM_001615.3 ACTG2 72 2 36.1 73973146 -455 N GCACGCAGGATTTCTTTCCTGGGTA[CG]GAAGGCATTTCTCTTCAGCTTTCATTGG ACT, ACTE, ACTA3, ACTL3, ACTSG Homo sapiens actin, gamma 2, smooth muscle, enteric (ACTG2), mRNA. actin, gamma 2 propeptide cg05473646

Total number of rows: 1505

Table truncated, full table size 397 Kbytes.




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