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| Status |
Public on Aug 13, 2012 |
| Title |
Role of CAMTA1 gene under drought stress |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
The CAMTA1 mutant and Col-0 were studied under water and drought condition. The camta1 showed stunted primary root growth under osmotic stress. The expression analysis revealed drought recovery as major indicative pathway along with membrane and chloroplast related protein in camta1 under drought stress. Large number of positively regulated genes were related to osmotic balance, transporters, AP2 and ABA. We used Affymetrix expression analysis to validate the role of CAMTA1 under drought stress.
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| Overall design |
The RNA of Col-0 and camta1 mutant were isolated in water and drought condition.The ATH1 gene chip was used for expression analysis.
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| Contributor(s) |
Pandey N, Ranjan A, Pant P, Sawant SV |
| Citation(s) |
23547968 |
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| Submission date |
Aug 12, 2012 |
| Last update date |
Aug 15, 2018 |
| Contact name |
samir v sawant |
| E-mail(s) |
samirsawant@nbri.res.in
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| Phone |
+91-522-2297947
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| Fax |
+91-522-2205839
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| Organization name |
national botanical research institute
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| Department |
CPMB & GE
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| Street address |
rana pratap marg
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| City |
lucknow |
| ZIP/Postal code |
226001 |
| Country |
India |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (24)
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| GSM984518 |
Col-0 leaf water, biological replicate 1 |
| GSM984519 |
Col-0 leaf water, biological replicate 2 |
| GSM984520 |
Col-0 leaf water, biological replicate 3 |
| GSM984521 |
Col-0 root water, biological replicate 1 |
| GSM984522 |
Col-0 root water, biological replicate 2 |
| GSM984523 |
Col-0 root water, biological replicate 3 |
| GSM984524 |
Col-0 leaf drought, biological replicate 1 |
| GSM984525 |
Col-0 leaf drought, biological replicate 2 |
| GSM984526 |
Col-0 leaf drought, biological replicate 3 |
| GSM984527 |
Col-0 root drought, biological replicate 1 |
| GSM984528 |
Col-0 root drought, biological replicate 2 |
| GSM984529 |
Col-0 root drought, biological replicate 3 |
| GSM984530 |
camta1 leaf water,biological replicate 1 |
| GSM984531 |
camta1 leaf water,biological replicate 2 |
| GSM984532 |
camta1 leaf water,biological replicate 3 |
| GSM984533 |
camta1 root water,biological replicate 1 |
| GSM984534 |
camta1 root water,biological replicate 2 |
| GSM984535 |
camta1 root water,biological replicate 3 |
| GSM984536 |
camta1 leaf drought,biological replicate 1 |
| GSM984537 |
camta1 leaf drought,biological replicate 2 |
| GSM984538 |
camta1 leaf drought,biological replicate 3 |
| GSM984539 |
camta1 root drought,biological replicate 1 |
| GSM984540 |
camta1 root drought,biological replicate 2 |
| GSM984541 |
camta1 root drought,biological replicate 3 |
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| Relations |
| Affiliated with |
GSE69995 |
| BioProject |
PRJNA172640 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE40061_RAW.tar |
46.9 Mb |
(http)(custom) |
TAR (of CEL, CHP) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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