|
| Status |
Public on Jan 01, 2013 |
| Title |
Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers (methylation) |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
|
| Summary |
Oral cavity squamous cell carcinoma (OSCC) is a disease with extensive morbidity and mortality and few useful molecular targets.
Multiplatform integrated genomic analysis was performed in order to identify genomic drivers and molecularly discernible tumor subtypes.
mRNA, miRNA and methylation data are all submitted to GEO
|
| |
|
| Overall design |
We measured methylation of 42 OSCC tumors, 2 normal oral epithelial tissues, and 2 normal blood samples with Illumina HumanMethylation450 arrays
|
| |
|
| Contributor(s) |
Pickering CR, Frederick MJ, Myers JN |
| Citation(s) |
23619168 |
| |
| Submission date |
Sep 24, 2012 |
| Last update date |
Mar 22, 2019 |
| Contact name |
Jiexin Zhang |
| E-mail(s) |
jiexinzhang@mdanderson.org
|
| Organization name |
UT MD Anderson Cancer Center
|
| Department |
Bioinformatics & Computational Biology
|
| Street address |
1515 Holcombe Blvd
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
|
| Samples (46)
|
|
| This SubSeries is part of SuperSeries: |
| GSE41117 |
Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers |
|
| Relations |
| BioProject |
PRJNA175837 |
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