|
| Status |
Public on Jan 01, 2013 |
| Title |
OSCC methylation 578 |
| Sample type |
genomic |
| |
|
| Source name |
OSCC
|
| Organism |
Homo sapiens |
| Characteristics |
gender: F
source tissue: Tongue
tissue: Oral cavity squamous cell carcinoma tumor
case: 578
|
| Treatment protocol |
not applicable
|
| Growth protocol |
not applicable
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Tri-reagent (Sigma)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina protocol
|
| |
|
| Hybridization protocol |
Standard Illumina protocol
|
| Scan protocol |
Standard Illumina protocol
|
| Description |
Tongue
|
| Data processing |
GenomeStudio software V2010.3 with GenomeStudio Methylation Version 1.8.5.
|
| |
|
| Submission date |
Sep 24, 2012 |
| Last update date |
Jan 01, 2013 |
| Contact name |
Jiexin Zhang |
| E-mail(s) |
jiexinzhang@mdanderson.org
|
| Organization name |
UT MD Anderson Cancer Center
|
| Department |
Bioinformatics & Computational Biology
|
| Street address |
1515 Holcombe Blvd
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE41114 |
Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers (methylation) |
| GSE41117 |
Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers |
|
