|
| Status |
Public on Mar 18, 2013 |
| Title |
Transcript map of Shewanella oneidensis MR-1 |
| Organism |
Shewanella oneidensis MR-1 |
| Experiment type |
Expression profiling by genome tiling array
|
| Summary |
High-resolution tiling analysis of the MR-1 transcriptome under diverse growth conditions
The conditions include aerobic growth in Luria-Bertani broth (LB), aerobic growth in defined lactate minimal medium, anaerobic growth in defined lactate minimal medium with 20mM dimethyl sulfoxide as the electron acceptor, anaerobic growth in defined lactate minimal medium with 10mM iron (III) citrate as the electron acceptor, 10 minutes post heat shock at 42oC
see GSE39468 for tiling data on lactate minimal media
|
| |
|
| Overall design |
Four slides hybridized to mRNA and one “genomic control” array hybridized to genomic DNA
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| |
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| Contributor(s) |
Shao W, Deutschbauer AM, Price MN, Arkin AP |
| Citation(s) |
24987095 |
| |
| Submission date |
Mar 15, 2013 |
| Last update date |
Jul 09, 2014 |
| Contact name |
Wenjun Shao |
| E-mail(s) |
wshao@lbl.gov
|
| Organization name |
University of California
|
| Department |
Molecular and Cell Biology
|
| Lab |
Adam Arkin
|
| Street address |
2151 Berkeley Way
|
| City |
Berkeley |
| State/province |
CA |
| ZIP/Postal code |
94704-5230 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL16797 |
Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] |
|
| Samples (5)
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| This SubSeries is part of SuperSeries: |
| GSE58337 |
Conservation of transcription start sites within genes across a bacterial genus |
|
| Relations |
| BioProject |
PRJNA193220 |
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