|
| Status |
Public on Jun 09, 2014 |
| Title |
Conservation of transcription start sites within genes across a bacterial genus |
| Organisms |
Shewanella sp. MR-4; Shewanella sp. MR-7; Shewanella sp. ANA-3; Shewanella oneidensis MR-1; Shewanella putrefaciens CN-32; Shewanella loihica PV-4; Shewanella amazonensis SB2B; Shewanella sp. W3-18-1 |
| Experiment type |
Expression profiling by genome tiling array
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
24987095 |
| |
| Submission date |
Jun 09, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Wenjun Shao |
| E-mail(s) |
wshao@lbl.gov
|
| Organization name |
University of California
|
| Department |
Molecular and Cell Biology
|
| Lab |
Adam Arkin
|
| Street address |
2151 Berkeley Way
|
| City |
Berkeley |
| State/province |
CA |
| ZIP/Postal code |
94704-5230 |
| Country |
USA |
| |
|
| Platforms (10)
|
| GPL16797 |
Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1] |
| GPL16835 |
Illumina HiSeq 2000 (Shewanella sp. ANA-3) |
| GPL16836 |
Illumina HiSeq 2000 (Shewanella putrefaciens CN-32) |
| GPL16837 |
Illumina HiSeq 2000 (Shewanella oneidensis MR-1) |
| GPL16838 |
Illumina HiSeq 2000 (Shewanella sp. MR-4) |
| GPL16840 |
Illumina HiSeq 2000 (Shewanella sp. MR-7) |
| GPL16841 |
Illumina HiSeq 2000 (Shewanella loihica PV-4) |
| GPL16842 |
Illumina HiSeq 2000 (Shewanella amazonensis SB2B) |
| GPL16843 |
Illumina HiSeq 2000 (Shewanella sp. W3-18-1) |
| GPL18765 |
Illumina MiSeq (Shewanella oneidensis MR-1) |
|
| Samples (26)
|
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE45217 |
Transcript map of Shewanella oneidensis MR-1 |
| GSE45311 |
Transcript structures in Shewanella sp ANA-3 |
| GSE45312 |
Transcript structures in Shewanella putrefaciens CN-32 |
| GSE45313 |
Transcript structures in Shewanella oneidensis MR-1 |
| GSE45314 |
Transcript structures in Shewanella sp MR-4 |
| GSE45315 |
Transcript structures in Shewanella sp MR-7 |
| GSE45316 |
Transcript structures in Shewanella loihica PV-4 |
| GSE45317 |
Transcript structures in Shewanella amazonensis SB2B |
| GSE45318 |
Transcript structures in Shewanella sp W3-18-1 |
| GSE58292 |
dRNA-seq of Shewanella oneidensis MR-1 |
|
| Relations |
| BioProject |
PRJNA252019 |
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