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Series GSE46597 Query DataSets for GSE46597
Status Public on Mar 28, 2016
Title Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To understand epigenetic changes in the distal regulatory as well as proximal regions, we performed RNA-seq, MBD-seq, and H3K27ac ChIP-seq on gastric tissues and cell lines.
Overall design mRNA sequencing profiles of normal tissue (n), purified gastric cancer (sc), and cultured gastric cancer cell (dc) were generated by deep sequencing, in five samples from three patients (csc1, csc2, csc3) and two replicates (csc1_sc2, csc1_sc3), using Illumina GAIIx and HiSeq2000.
Contributor(s) Oh S, Kim S, Baek S
Citation(s) 27016420
Submission date May 02, 2013
Last update date May 15, 2019
Contact name sujin Baek
Phone +82-10-7494-2876
Organization name KRIBB
Department MGRC
Street address Gwahank-ro 125
City Daejeon
ZIP/Postal code 305-806
Country South Korea
Platforms (2)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (15)
GSM1133021 csc1-dc_RNA-Seq
GSM1133022 csc1-mc_RNA-Seq
GSM1133023 csc1-sc_RNA-Seq
This SubSeries is part of SuperSeries:
GSE46598 Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer
BioProject PRJNA201423
SRA SRP022131

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46597_RNA_seq_normalized.txt.gz 492.6 Kb (ftp)(http) TXT
GSE46597_RNA_seq_normalized_2.txt.gz 362.6 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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