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Sample GSM1133021 Query DataSets for GSM1133021
Status Public on Mar 28, 2016
Title csc1-dc_RNA-Seq
Sample type SRA
Source name differentiated cell
Organism Homo sapiens
Characteristics cell type: differentiated cell
patient: csc1
Extracted molecule total RNA
Extraction protocol Standard RNA extraction protocol using Qiagen RNA mini kit
RNA libraries were prepared for sequencing using standard Illumina protocols.
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
Description cancer associated fibroblast -csc1 patient
Data processing Illumina Casava1.7 software used for basecalling.
mapped to hg19 whole genome using Tophat 2.
Reads Per Kilobase of exon per Megabase of library size (RPKM) were calculated using a standard protocol. The rpkm values are on log2 scale.
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include RPKM values
Submission date May 02, 2013
Last update date May 15, 2019
Contact name sujin Baek
Phone +82-10-7494-2876
Organization name KRIBB
Department MGRC
Street address Gwahank-ro 125
City Daejeon
ZIP/Postal code 305-806
Country South Korea
Platform ID GPL10999
Series (2)
GSE46597 Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer
GSE46598 Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer
BioSample SAMN02117471
SRA SRX275419

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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