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Series GSE47782 Query DataSets for GSE47782
Status Public on Jul 26, 2013
Title Evidence for a key role of cytochrome bo3 oxidase in respiratory energy metabolism of Gluconobacter oxydans
Organism Gluconobacter oxydans 621H
Experiment type Expression profiling by array
Summary The obligatory aerobic acetic acid bacterium Gluconobacter oxydans oxidizes a variety of substrates in the periplasm by membrane-bound dehydrogenases, which transfer the reducing equivalents to ubiquinone. Two quinol oxidases, cytochrome bo3 and cytochrome bd, then catalyze transfer of the electrons from ubiquinol to molecular oxygen. In this study, mutants lacking either of these terminal oxidases were characterized. Deletion of the cydAB genes for cytochrome bd had no obvious influence on growth, whereas the lack of the cyoBACD genes for cytochrome bo3 severely reduced the growth rate and the cell yield. Using a respiration activity monitoring system and adjusting different levels of oxygen availability, hints for a low oxygen affinity of cytochrome bd oxidase were obtained, which were supported by measurements of oxygen consumption in a respirometer. The H+/O ratio of the ΔcyoBACD mutant with mannitol as substrate was 0.56 ± 0.11 and more than 50% lower than that of the reference strain (1.26 ± 0.06) and the delta-cydAB mutant (1.31 ± 0.16), indicating that cytochrome bo3 oxidase is the main component for proton extrusion via the respiratory chain. Plasmid-based overexpression of cyoBACD led to increased growth rates and growth yields, both in the wild type and the delta-cyoBACD mutant, suggesting that cytochrome bo3 might be the rate-limiting factor of the respiratory chain.
 
Overall design The three transcriptome comparisons of G. oxydans ΔuppΔcyoBACD vs. G.oxydans Δupp were repeated independently three times in biological replicates resulting in 3 hybridizations as termed by sample 1 to 3.
 
Contributor(s) Richhardt J, Luchterhand B, Bringer S, Büchs J, Bott M
Citation(s) 23852873
Submission date Jun 10, 2013
Last update date Jul 28, 2013
Contact name Tino Polen
E-mail(s) t.polen@fz-juelich.de
Organization name Forschungszentrum Jülich GmbH
Department IBG-1: Biotechnology
Street address Leo Brandt Str.
City Juelich
State/province NRW
ZIP/Postal code 52425
Country Germany
 
Platforms (1)
GPL17271 FZ_IBG-1_Goxydans_10K_Ver1
Samples (3)
GSM1159655 Dupp_DcyoBACD_vs_Dupp rep1
GSM1159656 Dupp_DcyoBACD_vs_Dupp rep2
GSM1159657 Dupp_DcyoBACD_vs_Dupp_CSW
Relations
BioProject PRJNA207800

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE47782_RAW.tar 2.2 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table

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